==26640== Memcheck, a memory error detector ==26640== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==26640== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==26640== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestOffLatticeSimulation -malloc_debug -malloc_dump -memory_info ==26640== Parent PID: 24181 ==26640== ==26640== ==26640== FILE DESCRIPTORS: 9 open (3 std) at exit. ==26640== Open file descriptor 12: ==26640== at 0xF96707D: pipe (pipe.c:29) ==26640== by 0x196C007D: ??? ==26640== by 0x14D034CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==26640== by 0x115C3418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==26640== by 0x1155CD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==26640== by 0x10253D38: PetscInitialize (pinit.c:924) ==26640== by 0xF0FA1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==26640== by 0xF0FA227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==26640== by 0x311532: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==26640== by 0x307AD9: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==26640== by 0x30BEE0: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==26640== by 0x30BD80: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==26640== by 0x30C417: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==26640== by 0x305EF5: main (TestOffLatticeSimulation.cpp:19) ==26640== ==26640== Open file descriptor 8: /dev/shm/open_mpi.0000 ==26640== at 0xF96BA1C: __open_nocancel (open64_nocancel.c:39) ==26640== by 0xF8EFBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) ==26640== by 0xF12F822: ??? ==26640== by 0xF12F96F: ??? ==26640== by 0x14DA86DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==26640== by 0x14DA8938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==26640== by 0x14D5E922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==26640== by 0x14D032DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==26640== by 0x115C3418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==26640== by 0x1155CD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==26640== by 0x10253D38: PetscInitialize (pinit.c:924) ==26640== by 0xF0FA1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==26640== by 0xF0FA227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==26640== by 0x311532: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==26640== by 0x307AD9: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==26640== by 0x30BEE0: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==26640== by 0x30BD80: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==26640== by 0x30C417: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==26640== by 0x305EF5: main (TestOffLatticeSimulation.cpp:19) ==26640== ==26640== Open file descriptor 113: ==26640== ==26640== ==26640== Open file descriptor 110: ==26640== ==26640== ==26640== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestOffLatticeSimulation_valgrind.txt ==26640== ==26640== ==26640== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==26640== ==26640== ==26640== ==26640== HEAP SUMMARY: ==26640== in use at exit: 618,359 bytes in 8,236 blocks ==26640== total heap usage: 12,851,038 allocs, 12,842,802 frees, 3,858,670,204 bytes allocated ==26640== ==26640== LEAK SUMMARY: ==26640== definitely lost: 0 bytes in 0 blocks ==26640== indirectly lost: 0 bytes in 0 blocks ==26640== possibly lost: 0 bytes in 0 blocks ==26640== still reachable: 152 bytes in 4 blocks ==26640== suppressed: 618,207 bytes in 8,232 blocks ==26640== Reachable blocks (those to which a pointer was found) are not shown. ==26640== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==26640== ==26640== For lists of detected and suppressed errors, rerun with: -s ==26640== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 33 from 33)