==40976== Memcheck, a memory error detector ==40976== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==40976== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==40976== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/crypt/test/TestRunningCryptSimulationsWithMutationsTutorial -malloc_debug -malloc_dump -memory_info ==40976== Parent PID: 24181 ==40976== ==40976== ==40976== FILE DESCRIPTORS: 9 open (3 std) at exit. ==40976== Open file descriptor 12: ==40976== at 0x125B307D: pipe (pipe.c:29) ==40976== by 0x1B38007D: ??? ==40976== by 0x1652A4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==40976== by 0x11E76418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==40976== by 0x11E0FD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==40976== by 0x10AE3D38: PetscInitialize (pinit.c:924) ==40976== by 0x109BA1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==40976== by 0x109BA227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==40976== by 0x123E95: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==40976== by 0x11F713: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==40976== by 0x12197C: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==40976== by 0x121878: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==40976== by 0x121E8B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==40976== by 0x11DF15: main (TestRunningCryptSimulationsWithMutationsTutorial.cpp:18) ==40976== ==40976== Open file descriptor 8: /dev/shm/open_mpi.0000 ==40976== at 0x125B7A1C: __open_nocancel (open64_nocancel.c:39) ==40976== by 0x1253BBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) ==40976== by 0x11D6D822: ??? ==40976== by 0x11D6D96F: ??? ==40976== by 0x165CF6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==40976== by 0x165CF938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==40976== by 0x16585922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==40976== by 0x1652A2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==40976== by 0x11E76418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==40976== by 0x11E0FD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==40976== by 0x10AE3D38: PetscInitialize (pinit.c:924) ==40976== by 0x109BA1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==40976== by 0x109BA227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==40976== by 0x123E95: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==40976== by 0x11F713: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==40976== by 0x12197C: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==40976== by 0x121878: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==40976== by 0x121E8B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==40976== by 0x11DF15: main (TestRunningCryptSimulationsWithMutationsTutorial.cpp:18) ==40976== ==40976== Open file descriptor 113: ==40976== ==40976== ==40976== Open file descriptor 110: ==40976== ==40976== ==40976== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestRunningCryptSimulationsWithMutationsTutorial_valgrind.txt ==40976== ==40976== ==40976== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==40976== ==40976== ==40976== ==40976== HEAP SUMMARY: ==40976== in use at exit: 618,375 bytes in 8,236 blocks ==40976== total heap usage: 16,186,040 allocs, 16,177,804 frees, 2,829,759,062 bytes allocated ==40976== ==40976== LEAK SUMMARY: ==40976== definitely lost: 0 bytes in 0 blocks ==40976== indirectly lost: 0 bytes in 0 blocks ==40976== possibly lost: 0 bytes in 0 blocks ==40976== still reachable: 152 bytes in 4 blocks ==40976== suppressed: 618,223 bytes in 8,232 blocks ==40976== Reachable blocks (those to which a pointer was found) are not shown. ==40976== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==40976== ==40976== For lists of detected and suppressed errors, rerun with: -s ==40976== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 33 from 33)