==40894== Memcheck, a memory error detector ==40894== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==40894== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==40894== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/lung/test/TestAirwayGenerator -malloc_debug -malloc_dump -memory_info ==40894== Parent PID: 23887 ==40894== ==40894== ==40894== FILE DESCRIPTORS: 9 open (3 std) at exit. ==40894== Open file descriptor 12: ==40894== at 0x6BD107D: pipe (pipe.c:29) ==40894== by 0x107A707D: ??? ==40894== by 0xBAC94CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==40894== by 0x5ED6418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==40894== by 0x5E6FD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==40894== by 0x4B43D38: PetscInitialize (pinit.c:924) ==40894== by 0x4A182DF: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==40894== by 0x4A1832D: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==40894== by 0x11872F: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==40894== by 0x11390D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==40894== by 0x1166E8: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==40894== by 0x116588: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==40894== by 0x116C1F: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==40894== by 0x111D35: main (TestAirwayGenerator.cpp:19) ==40894== ==40894== Open file descriptor 8: /dev/shm/open_mpi.0000 ==40894== at 0x6BD5A1C: __open_nocancel (open64_nocancel.c:39) ==40894== by 0x6B59BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) ==40894== by 0x5DCD822: ??? ==40894== by 0x5DCD96F: ??? ==40894== by 0xBB6E6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==40894== by 0xBB6E938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==40894== by 0xBB24922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==40894== by 0xBAC92DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==40894== by 0x5ED6418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==40894== by 0x5E6FD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==40894== by 0x4B43D38: PetscInitialize (pinit.c:924) ==40894== by 0x4A182DF: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==40894== by 0x4A1832D: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==40894== by 0x11872F: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==40894== by 0x11390D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==40894== by 0x1166E8: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==40894== by 0x116588: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==40894== by 0x116C1F: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==40894== by 0x111D35: main (TestAirwayGenerator.cpp:19) ==40894== ==40894== Open file descriptor 113: ==40894== ==40894== ==40894== Open file descriptor 110: ==40894== ==40894== ==40894== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestAirwayGenerator_valgrind.txt ==40894== ==40894== ==40894== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==40894== ==40894== ==40894== ==40894== HEAP SUMMARY: ==40894== in use at exit: 618,330 bytes in 8,238 blocks ==40894== total heap usage: 627,254 allocs, 619,016 frees, 1,787,062,864 bytes allocated ==40894== ==40894== LEAK SUMMARY: ==40894== definitely lost: 0 bytes in 0 blocks ==40894== indirectly lost: 0 bytes in 0 blocks ==40894== possibly lost: 0 bytes in 0 blocks ==40894== still reachable: 24 bytes in 2 blocks ==40894== suppressed: 618,306 bytes in 8,236 blocks ==40894== Reachable blocks (those to which a pointer was found) are not shown. ==40894== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==40894== ==40894== For lists of detected and suppressed errors, rerun with: -s ==40894== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37)