==39995== Memcheck, a memory error detector ==39995== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==39995== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==39995== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestRunningNodeBasedSimulationsTutorial -malloc_debug -malloc_dump -memory_info ==39995== Parent PID: 23887 ==39995== ==39995== ==39995== FILE DESCRIPTORS: 9 open (3 std) at exit. ==39995== Open file descriptor 12: ==39995== at 0xF8DE07D: pipe (pipe.c:29) ==39995== by 0x196AE07D: ??? ==39995== by 0x14CB14CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==39995== by 0x1157E418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==39995== by 0x11517D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==39995== by 0x1020ED38: PetscInitialize (pinit.c:924) ==39995== by 0xF0FA2DF: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==39995== by 0xF0FA32D: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==39995== by 0x12C638: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==39995== by 0x127BAD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==39995== by 0x12A25C: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==39995== by 0x12A0FC: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==39995== by 0x12A793: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==39995== by 0x125FD5: main (TestRunningNodeBasedSimulationsTutorial.cpp:19) ==39995== ==39995== Open file descriptor 8: /dev/shm/open_mpi.0000 ==39995== at 0xF8E2A1C: __open_nocancel (open64_nocancel.c:39) ==39995== by 0xF866BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) ==39995== by 0xF12F822: ??? ==39995== by 0xF12F96F: ??? ==39995== by 0x14D566DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==39995== by 0x14D56938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==39995== by 0x14D0C922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==39995== by 0x14CB12DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==39995== by 0x1157E418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==39995== by 0x11517D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==39995== by 0x1020ED38: PetscInitialize (pinit.c:924) ==39995== by 0xF0FA2DF: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==39995== by 0xF0FA32D: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==39995== by 0x12C638: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==39995== by 0x127BAD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==39995== by 0x12A25C: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==39995== by 0x12A0FC: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==39995== by 0x12A793: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==39995== by 0x125FD5: main (TestRunningNodeBasedSimulationsTutorial.cpp:19) ==39995== ==39995== Open file descriptor 113: ==39995== ==39995== ==39995== Open file descriptor 110: ==39995== ==39995== ==39995== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestRunningNodeBasedSimulationsTutorial_valgrind.txt ==39995== ==39995== ==39995== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==39995== ==39995== ==39995== ==39995== HEAP SUMMARY: ==39995== in use at exit: 618,362 bytes in 8,239 blocks ==39995== total heap usage: 672,356 allocs, 664,117 frees, 1,725,082,465 bytes allocated ==39995== ==39995== LEAK SUMMARY: ==39995== definitely lost: 0 bytes in 0 blocks ==39995== indirectly lost: 0 bytes in 0 blocks ==39995== possibly lost: 0 bytes in 0 blocks ==39995== still reachable: 56 bytes in 3 blocks ==39995== suppressed: 618,306 bytes in 8,236 blocks ==39995== Reachable blocks (those to which a pointer was found) are not shown. ==39995== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==39995== ==39995== For lists of detected and suppressed errors, rerun with: -s ==39995== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37)