==25733== Memcheck, a memory error detector ==25733== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==25733== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==25733== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestCaUpdateRules -malloc_debug -malloc_dump -memory_info ==25733== Parent PID: 23829 ==25733== ==25733== ==25733== FILE DESCRIPTORS: 9 open (3 std) at exit. ==25733== Open file descriptor 12: ==25733== at 0xDBDE07D: pipe (pipe.c:29) ==25733== by 0x196AE07D: ??? ==25733== by 0x14CBE4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==25733== by 0x11497418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==25733== by 0x11430D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==25733== by 0x10127D38: PetscInitialize (pinit.c:924) ==25733== by 0xD49D2DF: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==25733== by 0xD49D32D: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==25733== by 0x132B46: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==25733== by 0x12BE43: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==25733== by 0x12E998: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==25733== by 0x12E893: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==25733== by 0x12EEA7: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==25733== by 0x12A645: main (TestCaUpdateRules.cpp:18) ==25733== ==25733== Open file descriptor 8: /dev/shm/open_mpi.0000 ==25733== at 0xDBE2A1C: __open_nocancel (open64_nocancel.c:39) ==25733== by 0xDB66BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) ==25733== by 0xD4D2822: ??? ==25733== by 0xD4D296F: ??? ==25733== by 0x14D636DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==25733== by 0x14D63938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==25733== by 0x14D19922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==25733== by 0x14CBE2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==25733== by 0x11497418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==25733== by 0x11430D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==25733== by 0x10127D38: PetscInitialize (pinit.c:924) ==25733== by 0xD49D2DF: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==25733== by 0xD49D32D: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==25733== by 0x132B46: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==25733== by 0x12BE43: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==25733== by 0x12E998: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==25733== by 0x12E893: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==25733== by 0x12EEA7: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==25733== by 0x12A645: main (TestCaUpdateRules.cpp:18) ==25733== ==25733== Open file descriptor 113: ==25733== ==25733== ==25733== Open file descriptor 110: ==25733== ==25733== ==25733== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestCaUpdateRules_valgrind.txt ==25733== ==25733== ==25733== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==25733== ==25733== ==25733== ==25733== HEAP SUMMARY: ==25733== in use at exit: 618,362 bytes in 8,239 blocks ==25733== total heap usage: 55,759 allocs, 47,520 frees, 1,339,202,757 bytes allocated ==25733== ==25733== LEAK SUMMARY: ==25733== definitely lost: 0 bytes in 0 blocks ==25733== indirectly lost: 0 bytes in 0 blocks ==25733== possibly lost: 0 bytes in 0 blocks ==25733== still reachable: 56 bytes in 3 blocks ==25733== suppressed: 618,306 bytes in 8,236 blocks ==25733== Reachable blocks (those to which a pointer was found) are not shown. ==25733== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==25733== ==25733== For lists of detected and suppressed errors, rerun with: -s ==25733== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 36 from 36)