==40109== Memcheck, a memory error detector ==40109== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==40109== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==40109== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/crypt/test/TestVertexCryptBoundaryForce -malloc_debug -malloc_dump -memory_info ==40109== Parent PID: 23829 ==40109== ==40109== ==40109== FILE DESCRIPTORS: 9 open (3 std) at exit. ==40109== Open file descriptor 12: ==40109== at 0x110B707D: pipe (pipe.c:29) ==40109== by 0x1B37007D: ??? ==40109== by 0x165704CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==40109== by 0x12E3E418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==40109== by 0x12DD7D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==40109== by 0x11ACED38: PetscInitialize (pinit.c:924) ==40109== by 0x109BA2DF: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==40109== by 0x109BA32D: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==40109== by 0x126BFE: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==40109== by 0x11FE4D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==40109== by 0x1228FC: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==40109== by 0x12279C: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==40109== by 0x122E33: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==40109== by 0x11E275: main (TestVertexCryptBoundaryForce.cpp:19) ==40109== ==40109== Open file descriptor 8: /dev/shm/open_mpi.0000 ==40109== at 0x110BBA1C: __open_nocancel (open64_nocancel.c:39) ==40109== by 0x1103FBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) ==40109== by 0x109EF822: ??? ==40109== by 0x109EF96F: ??? ==40109== by 0x166156DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==40109== by 0x16615938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==40109== by 0x165CB922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==40109== by 0x165702DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==40109== by 0x12E3E418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==40109== by 0x12DD7D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==40109== by 0x11ACED38: PetscInitialize (pinit.c:924) ==40109== by 0x109BA2DF: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==40109== by 0x109BA32D: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==40109== by 0x126BFE: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==40109== by 0x11FE4D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==40109== by 0x1228FC: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==40109== by 0x12279C: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==40109== by 0x122E33: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==40109== by 0x11E275: main (TestVertexCryptBoundaryForce.cpp:19) ==40109== ==40109== Open file descriptor 113: ==40109== ==40109== ==40109== Open file descriptor 110: ==40109== ==40109== ==40109== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestVertexCryptBoundaryForce_valgrind.txt ==40109== ==40109== ==40109== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==40109== ==40109== ==40109== ==40109== HEAP SUMMARY: ==40109== in use at exit: 618,378 bytes in 8,239 blocks ==40109== total heap usage: 56,511 allocs, 48,272 frees, 1,339,181,265 bytes allocated ==40109== ==40109== LEAK SUMMARY: ==40109== definitely lost: 0 bytes in 0 blocks ==40109== indirectly lost: 0 bytes in 0 blocks ==40109== possibly lost: 0 bytes in 0 blocks ==40109== still reachable: 56 bytes in 3 blocks ==40109== suppressed: 618,322 bytes in 8,236 blocks ==40109== Reachable blocks (those to which a pointer was found) are not shown. ==40109== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==40109== ==40109== For lists of detected and suppressed errors, rerun with: -s ==40109== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37)