==26988== Memcheck, a memory error detector ==26988== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==26988== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==26988== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestOffLatticeSimulationWithVertexBasedCellPopulation -malloc_debug -malloc_dump -memory_info ==26988== Parent PID: 23860 ==26988== ==26988== ==26988== FILE DESCRIPTORS: 9 open (3 std) at exit. ==26988== Open file descriptor 12: ==26988== at 0x10DD707D: pipe (pipe.c:29) ==26988== by 0x196AE07D: ??? ==26988== by 0x14C134CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==26988== by 0x105F8418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==26988== by 0x10591D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==26988== by 0xF288D38: PetscInitialize (pinit.c:924) ==26988== by 0xF0FA1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==26988== by 0xF0FA227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==26988== by 0x1FFF0F: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==26988== by 0x1F9AB9: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==26988== by 0x1FD424: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==26988== by 0x1FD2C4: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==26988== by 0x1FD95B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==26988== by 0x1F7ED5: main (TestOffLatticeSimulationWithVertexBasedCellPopulation.cpp:19) ==26988== ==26988== Open file descriptor 8: /dev/shm/open_mpi.0000 ==26988== at 0x10DDBA1C: __open_nocancel (open64_nocancel.c:39) ==26988== by 0x10D5FBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) ==26988== by 0xF12F822: ??? ==26988== by 0xF12F96F: ??? ==26988== by 0x14CB86DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==26988== by 0x14CB8938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==26988== by 0x14C6E922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==26988== by 0x14C132DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==26988== by 0x105F8418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==26988== by 0x10591D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==26988== by 0xF288D38: PetscInitialize (pinit.c:924) ==26988== by 0xF0FA1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==26988== by 0xF0FA227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==26988== by 0x1FFF0F: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==26988== by 0x1F9AB9: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==26988== by 0x1FD424: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==26988== by 0x1FD2C4: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==26988== by 0x1FD95B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==26988== by 0x1F7ED5: main (TestOffLatticeSimulationWithVertexBasedCellPopulation.cpp:19) ==26988== ==26988== Open file descriptor 113: ==26988== ==26988== ==26988== Open file descriptor 110: ==26988== ==26988== ==26988== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestOffLatticeSimulationWithVertexBasedCellPopulation_valgrind.txt ==26988== ==26988== ==26988== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==26988== ==26988== ==26988== ==26988== HEAP SUMMARY: ==26988== in use at exit: 618,295 bytes in 8,235 blocks ==26988== total heap usage: 9,703,047 allocs, 9,694,812 frees, 2,583,525,793 bytes allocated ==26988== ==26988== LEAK SUMMARY: ==26988== definitely lost: 0 bytes in 0 blocks ==26988== indirectly lost: 0 bytes in 0 blocks ==26988== possibly lost: 0 bytes in 0 blocks ==26988== still reachable: 56 bytes in 3 blocks ==26988== suppressed: 618,239 bytes in 8,232 blocks ==26988== Reachable blocks (those to which a pointer was found) are not shown. ==26988== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==26988== ==26988== For lists of detected and suppressed errors, rerun with: -s ==26988== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 33 from 33)