==35012== Memcheck, a memory error detector ==35012== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==35012== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==35012== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestOnLatticeSimulationWithPottsBasedCellPopulation -malloc_debug -malloc_dump -memory_info ==35012== Parent PID: 23860 ==35012== ==35012== ==35012== FILE DESCRIPTORS: 9 open (3 std) at exit. ==35012== Open file descriptor 12: ==35012== at 0xF92207D: pipe (pipe.c:29) ==35012== by 0x196AE07D: ??? ==35012== by 0x14CB14CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==35012== by 0x1157E418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==35012== by 0x11517D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==35012== by 0x1020ED38: PetscInitialize (pinit.c:924) ==35012== by 0xF0FA1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==35012== by 0xF0FA227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==35012== by 0x1D7654: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==35012== by 0x1CF139: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==35012== by 0x1D29B8: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==35012== by 0x1D2858: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==35012== by 0x1D2EEF: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==35012== by 0x1CD555: main (TestOnLatticeSimulationWithPottsBasedCellPopulation.cpp:19) ==35012== ==35012== Open file descriptor 8: /dev/shm/open_mpi.0000 ==35012== at 0xF926A1C: __open_nocancel (open64_nocancel.c:39) ==35012== by 0xF8AABCF: shm_open@@GLIBC_2.34 (shm_open.c:40) ==35012== by 0xF12F822: ??? ==35012== by 0xF12F96F: ??? ==35012== by 0x14D566DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==35012== by 0x14D56938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==35012== by 0x14D0C922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==35012== by 0x14CB12DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==35012== by 0x1157E418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==35012== by 0x11517D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==35012== by 0x1020ED38: PetscInitialize (pinit.c:924) ==35012== by 0xF0FA1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==35012== by 0xF0FA227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==35012== by 0x1D7654: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==35012== by 0x1CF139: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==35012== by 0x1D29B8: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==35012== by 0x1D2858: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==35012== by 0x1D2EEF: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==35012== by 0x1CD555: main (TestOnLatticeSimulationWithPottsBasedCellPopulation.cpp:19) ==35012== ==35012== Open file descriptor 113: ==35012== ==35012== ==35012== Open file descriptor 110: ==35012== ==35012== ==35012== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestOnLatticeSimulationWithPottsBasedCellPopulation_valgrind.txt ==35012== ==35012== ==35012== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==35012== ==35012== ==35012== ==35012== HEAP SUMMARY: ==35012== in use at exit: 618,311 bytes in 8,236 blocks ==35012== total heap usage: 11,682,198 allocs, 11,673,962 frees, 2,208,180,901 bytes allocated ==35012== ==35012== LEAK SUMMARY: ==35012== definitely lost: 0 bytes in 0 blocks ==35012== indirectly lost: 0 bytes in 0 blocks ==35012== possibly lost: 0 bytes in 0 blocks ==35012== still reachable: 72 bytes in 4 blocks ==35012== suppressed: 618,239 bytes in 8,232 blocks ==35012== Reachable blocks (those to which a pointer was found) are not shown. ==35012== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==35012== ==35012== For lists of detected and suppressed errors, rerun with: -s ==35012== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 33 from 33)