==39957== Memcheck, a memory error detector ==39957== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==39957== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==39957== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestRunningNodeBasedSimulationsTutorial -malloc_debug -malloc_dump -memory_info ==39957== Parent PID: 23860 ==39957== ==39957== ==39957== FILE DESCRIPTORS: 9 open (3 std) at exit. ==39957== Open file descriptor 12: ==39957== at 0xF8DE07D: pipe (pipe.c:29) ==39957== by 0x196AE07D: ??? ==39957== by 0x14CB14CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==39957== by 0x1157E418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==39957== by 0x11517D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==39957== by 0x1020ED38: PetscInitialize (pinit.c:924) ==39957== by 0xF0FA1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==39957== by 0xF0FA227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==39957== by 0x12C638: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==39957== by 0x127BAD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==39957== by 0x12A25C: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==39957== by 0x12A0FC: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==39957== by 0x12A793: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==39957== by 0x125FD5: main (TestRunningNodeBasedSimulationsTutorial.cpp:19) ==39957== ==39957== Open file descriptor 8: /dev/shm/open_mpi.0000 ==39957== at 0xF8E2A1C: __open_nocancel (open64_nocancel.c:39) ==39957== by 0xF866BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) ==39957== by 0xF12F822: ??? ==39957== by 0xF12F96F: ??? ==39957== by 0x14D566DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==39957== by 0x14D56938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==39957== by 0x14D0C922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==39957== by 0x14CB12DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==39957== by 0x1157E418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==39957== by 0x11517D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==39957== by 0x1020ED38: PetscInitialize (pinit.c:924) ==39957== by 0xF0FA1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==39957== by 0xF0FA227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==39957== by 0x12C638: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==39957== by 0x127BAD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==39957== by 0x12A25C: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==39957== by 0x12A0FC: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==39957== by 0x12A793: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==39957== by 0x125FD5: main (TestRunningNodeBasedSimulationsTutorial.cpp:19) ==39957== ==39957== Open file descriptor 113: ==39957== ==39957== ==39957== Open file descriptor 110: ==39957== ==39957== ==39957== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestRunningNodeBasedSimulationsTutorial_valgrind.txt ==39957== ==39957== ==39957== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==39957== ==39957== ==39957== ==39957== HEAP SUMMARY: ==39957== in use at exit: 618,366 bytes in 8,239 blocks ==39957== total heap usage: 672,359 allocs, 664,120 frees, 1,725,081,848 bytes allocated ==39957== ==39957== LEAK SUMMARY: ==39957== definitely lost: 0 bytes in 0 blocks ==39957== indirectly lost: 0 bytes in 0 blocks ==39957== possibly lost: 0 bytes in 0 blocks ==39957== still reachable: 56 bytes in 3 blocks ==39957== suppressed: 618,310 bytes in 8,236 blocks ==39957== Reachable blocks (those to which a pointer was found) are not shown. ==39957== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==39957== ==39957== For lists of detected and suppressed errors, rerun with: -s ==39957== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37)