==43404== Memcheck, a memory error detector ==43404== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==43404== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==43404== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/heart/test/TestMonodomainProblem -malloc_debug -malloc_dump -memory_info ==43404== Parent PID: 24218 ==43404== ==43404== Warning: invalid file descriptor -1 in syscall close() ==43404== ==43404== FILE DESCRIPTORS: 9 open (3 std) at exit. ==43404== Open file descriptor 12: ==43404== at 0xC10807D: pipe (pipe.c:29) ==43404== by 0x1433007D: ??? ==43404== by 0xFFF34CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==43404== by 0xB9F6418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==43404== by 0xB98FD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==43404== by 0xA2D1D38: PetscInitialize (pinit.c:924) ==43404== by 0xA1411D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==43404== by 0xA141227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==43404== by 0x14A2B6: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==43404== by 0x14182D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==43404== by 0x144A20: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==43404== by 0x1448C0: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==43404== by 0x144F57: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==43404== by 0x13FC05: main (TestMonodomainProblem.cpp:19) ==43404== ==43404== Open file descriptor 8: /dev/shm/open_mpi.0000 ==43404== at 0xC10CA1C: __open_nocancel (open64_nocancel.c:39) ==43404== by 0xC090BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) ==43404== by 0xA176822: ??? ==43404== by 0xA17696F: ??? ==43404== by 0x100986DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==43404== by 0x10098938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==43404== by 0x1004E922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==43404== by 0xFFF32DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==43404== by 0xB9F6418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==43404== by 0xB98FD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==43404== by 0xA2D1D38: PetscInitialize (pinit.c:924) ==43404== by 0xA1411D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==43404== by 0xA141227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==43404== by 0x14A2B6: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==43404== by 0x14182D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==43404== by 0x144A20: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==43404== by 0x1448C0: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==43404== by 0x144F57: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==43404== by 0x13FC05: main (TestMonodomainProblem.cpp:19) ==43404== ==43404== Open file descriptor 113: ==43404== ==43404== ==43404== Open file descriptor 110: ==43404== ==43404== ==43404== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestMonodomainProblem_valgrind.txt ==43404== ==43404== ==43404== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==43404== ==43404== ==43404== ==43404== HEAP SUMMARY: ==43404== in use at exit: 618,759 bytes in 8,244 blocks ==43404== total heap usage: 6,613,804 allocs, 6,605,560 frees, 4,016,616,254 bytes allocated ==43404== ==43404== LEAK SUMMARY: ==43404== definitely lost: 0 bytes in 0 blocks ==43404== indirectly lost: 0 bytes in 0 blocks ==43404== possibly lost: 0 bytes in 0 blocks ==43404== still reachable: 24 bytes in 2 blocks ==43404== suppressed: 618,735 bytes in 8,242 blocks ==43404== Reachable blocks (those to which a pointer was found) are not shown. ==43404== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==43404== ==43404== For lists of detected and suppressed errors, rerun with: -s ==43404== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 128 from 34)