==26092== Memcheck, a memory error detector ==26092== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==26092== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==26092== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestTysonNovak2001OdeSystem -malloc_debug -malloc_dump -memory_info ==26092== Parent PID: 24235 ==26092== ==26092== ==26092== FILE DESCRIPTORS: 9 open (3 std) at exit. ==26092== Open file descriptor 12: ==26092== at 0xDB4E07D: pipe (pipe.c:29) ==26092== by 0x196AD07D: ??? ==26092== by 0x14C654CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==26092== by 0x11150418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==26092== by 0x110E9D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==26092== by 0xFDE0D38: PetscInitialize (pinit.c:924) ==26092== by 0xD7541D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==26092== by 0xD754227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==26092== by 0x12417A: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==26092== by 0x11F743: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==26092== by 0x121D24: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==26092== by 0x121C20: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==26092== by 0x122233: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==26092== by 0x11DF45: main (TestTysonNovak2001OdeSystem.cpp:18) ==26092== ==26092== Open file descriptor 8: /dev/shm/open_mpi.0000 ==26092== at 0xDB52A1C: __open_nocancel (open64_nocancel.c:39) ==26092== by 0xDAD6BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) ==26092== by 0xD789822: ??? ==26092== by 0xD78996F: ??? ==26092== by 0x14D0A6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==26092== by 0x14D0A938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==26092== by 0x14CC0922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==26092== by 0x14C652DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==26092== by 0x11150418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==26092== by 0x110E9D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==26092== by 0xFDE0D38: PetscInitialize (pinit.c:924) ==26092== by 0xD7541D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==26092== by 0xD754227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==26092== by 0x12417A: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==26092== by 0x11F743: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==26092== by 0x121D24: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==26092== by 0x121C20: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==26092== by 0x122233: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==26092== by 0x11DF45: main (TestTysonNovak2001OdeSystem.cpp:18) ==26092== ==26092== Open file descriptor 113: ==26092== ==26092== ==26092== Open file descriptor 110: ==26092== ==26092== ==26092== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestTysonNovak2001OdeSystem_valgrind.txt ==26092== ==26092== ==26092== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==26092== ==26092== ==26092== ==26092== HEAP SUMMARY: ==26092== in use at exit: 618,334 bytes in 8,238 blocks ==26092== total heap usage: 58,418 allocs, 50,180 frees, 1,339,317,112 bytes allocated ==26092== ==26092== LEAK SUMMARY: ==26092== definitely lost: 0 bytes in 0 blocks ==26092== indirectly lost: 0 bytes in 0 blocks ==26092== possibly lost: 0 bytes in 0 blocks ==26092== still reachable: 24 bytes in 2 blocks ==26092== suppressed: 618,310 bytes in 8,236 blocks ==26092== Reachable blocks (those to which a pointer was found) are not shown. ==26092== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==26092== ==26092== For lists of detected and suppressed errors, rerun with: -s ==26092== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37)