==40407== Memcheck, a memory error detector ==40407== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==40407== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==40407== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/crypt/test/TestWntCellCycleOdeSystem -malloc_debug -malloc_dump -memory_info ==40407== Parent PID: 24054 ==40407== ==40407== ==40407== FILE DESCRIPTORS: 9 open (3 std) at exit. ==40407== Open file descriptor 12: ==40407== at 0x1085207D: pipe (pipe.c:29) ==40407== by 0x1B36F07D: ??? ==40407== by 0x1550F4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==40407== by 0x1049F418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==40407== by 0x10438D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==40407== by 0xF12FD38: PetscInitialize (pinit.c:924) ==40407== by 0xEFA11D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==40407== by 0xEFA1227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==40407== by 0x1264BD: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==40407== by 0x1217C3: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==40407== by 0x123E3A: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==40407== by 0x123D36: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==40407== by 0x124349: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==40407== by 0x11FFC5: main (TestWntCellCycleOdeSystem.cpp:18) ==40407== ==40407== Open file descriptor 8: /dev/shm/open_mpi.0000 ==40407== at 0x10856A1C: __open_nocancel (open64_nocancel.c:39) ==40407== by 0x107DABCF: shm_open@@GLIBC_2.34 (shm_open.c:40) ==40407== by 0xEFD6822: ??? ==40407== by 0xEFD696F: ??? ==40407== by 0x155B46DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==40407== by 0x155B4938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==40407== by 0x1556A922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==40407== by 0x1550F2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==40407== by 0x1049F418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==40407== by 0x10438D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==40407== by 0xF12FD38: PetscInitialize (pinit.c:924) ==40407== by 0xEFA11D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==40407== by 0xEFA1227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==40407== by 0x1264BD: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==40407== by 0x1217C3: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==40407== by 0x123E3A: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==40407== by 0x123D36: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==40407== by 0x124349: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==40407== by 0x11FFC5: main (TestWntCellCycleOdeSystem.cpp:18) ==40407== ==40407== Open file descriptor 113: ==40407== ==40407== ==40407== Open file descriptor 110: ==40407== ==40407== ==40407== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestWntCellCycleOdeSystem_valgrind.txt ==40407== ==40407== ==40407== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==40407== ==40407== ==40407== ==40407== HEAP SUMMARY: ==40407== in use at exit: 618,350 bytes in 8,238 blocks ==40407== total heap usage: 185,583 allocs, 177,345 frees, 1,419,924,903 bytes allocated ==40407== ==40407== LEAK SUMMARY: ==40407== definitely lost: 0 bytes in 0 blocks ==40407== indirectly lost: 0 bytes in 0 blocks ==40407== possibly lost: 0 bytes in 0 blocks ==40407== still reachable: 24 bytes in 2 blocks ==40407== suppressed: 618,326 bytes in 8,236 blocks ==40407== Reachable blocks (those to which a pointer was found) are not shown. ==40407== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==40407== ==40407== For lists of detected and suppressed errors, rerun with: -s ==40407== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37)