==27178== Memcheck, a memory error detector ==27178== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==27178== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==27178== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestOffLatticeSimulationWithVertexBasedCellPopulation -malloc_debug -malloc_dump -memory_info ==27178== Parent PID: 24075 ==27178== ==27178== ==27178== FILE DESCRIPTORS: 9 open (3 std) at exit. ==27178== Open file descriptor 12: ==27178== at 0x10DD707D: pipe (pipe.c:29) ==27178== by 0x196AE07D: ??? ==27178== by 0x14C134CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==27178== by 0x105F8418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==27178== by 0x10591D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==27178== by 0xF288D38: PetscInitialize (pinit.c:924) ==27178== by 0xF0FA1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==27178== by 0xF0FA227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==27178== by 0x1FFF0F: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==27178== by 0x1F9AB9: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==27178== by 0x1FD424: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==27178== by 0x1FD2C4: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==27178== by 0x1FD95B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==27178== by 0x1F7ED5: main (TestOffLatticeSimulationWithVertexBasedCellPopulation.cpp:19) ==27178== ==27178== Open file descriptor 8: /dev/shm/open_mpi.0000 ==27178== at 0x10DDBA1C: __open_nocancel (open64_nocancel.c:39) ==27178== by 0x10D5FBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) ==27178== by 0xF12F822: ??? ==27178== by 0xF12F96F: ??? ==27178== by 0x14CB86DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==27178== by 0x14CB8938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==27178== by 0x14C6E922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==27178== by 0x14C132DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==27178== by 0x105F8418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==27178== by 0x10591D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==27178== by 0xF288D38: PetscInitialize (pinit.c:924) ==27178== by 0xF0FA1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==27178== by 0xF0FA227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==27178== by 0x1FFF0F: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==27178== by 0x1F9AB9: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==27178== by 0x1FD424: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==27178== by 0x1FD2C4: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==27178== by 0x1FD95B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==27178== by 0x1F7ED5: main (TestOffLatticeSimulationWithVertexBasedCellPopulation.cpp:19) ==27178== ==27178== Open file descriptor 113: ==27178== ==27178== ==27178== Open file descriptor 110: ==27178== ==27178== ==27178== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestOffLatticeSimulationWithVertexBasedCellPopulation_valgrind.txt ==27178== ==27178== ==27178== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==27178== ==27178== ==27178== ==27178== HEAP SUMMARY: ==27178== in use at exit: 618,297 bytes in 8,235 blocks ==27178== total heap usage: 9,703,046 allocs, 9,694,811 frees, 2,583,526,412 bytes allocated ==27178== ==27178== LEAK SUMMARY: ==27178== definitely lost: 0 bytes in 0 blocks ==27178== indirectly lost: 0 bytes in 0 blocks ==27178== possibly lost: 0 bytes in 0 blocks ==27178== still reachable: 56 bytes in 3 blocks ==27178== suppressed: 618,241 bytes in 8,232 blocks ==27178== Reachable blocks (those to which a pointer was found) are not shown. ==27178== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==27178== ==27178== For lists of detected and suppressed errors, rerun with: -s ==27178== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 33 from 33)