==43509== Memcheck, a memory error detector ==43509== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==43509== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==43509== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/heart/test/TestCheckpointing -malloc_debug -malloc_dump -memory_info ==43509== Parent PID: 24013 ==43509== ==43509== ==43509== FILE DESCRIPTORS: 9 open (3 std) at exit. ==43509== Open file descriptor 12: ==43509== at 0xA7C307D: pipe (pipe.c:29) ==43509== by 0x1432707D: ??? ==43509== by 0xFB2B4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==43509== by 0xBEBC418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==43509== by 0xBE55D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==43509== by 0xAB4CD38: PetscInitialize (pinit.c:924) ==43509== by 0xA0AA1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==43509== by 0xA0AA227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==43509== by 0x1239FA: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==43509== by 0x11E4F3: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==43509== by 0x120D74: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==43509== by 0x120C6F: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==43509== by 0x121283: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==43509== by 0x11CCF5: main (TestCheckpointing.cpp:18) ==43509== ==43509== Open file descriptor 8: /dev/shm/open_mpi.0000 ==43509== at 0xA7C7A1C: __open_nocancel (open64_nocancel.c:39) ==43509== by 0xA74BBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) ==43509== by 0xA0DF822: ??? ==43509== by 0xA0DF96F: ??? ==43509== by 0xFBD06DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==43509== by 0xFBD0938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==43509== by 0xFB86922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==43509== by 0xFB2B2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==43509== by 0xBEBC418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==43509== by 0xBE55D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==43509== by 0xAB4CD38: PetscInitialize (pinit.c:924) ==43509== by 0xA0AA1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==43509== by 0xA0AA227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==43509== by 0x1239FA: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==43509== by 0x11E4F3: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==43509== by 0x120D74: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==43509== by 0x120C6F: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==43509== by 0x121283: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==43509== by 0x11CCF5: main (TestCheckpointing.cpp:18) ==43509== ==43509== Open file descriptor 113: ==43509== ==43509== ==43509== Open file descriptor 110: ==43509== ==43509== ==43509== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestCheckpointing_valgrind.txt ==43509== ==43509== ==43509== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==43509== ==43509== ==43509== ==43509== HEAP SUMMARY: ==43509== in use at exit: 618,761 bytes in 8,244 blocks ==43509== total heap usage: 834,308 allocs, 826,064 frees, 1,443,021,710 bytes allocated ==43509== ==43509== LEAK SUMMARY: ==43509== definitely lost: 0 bytes in 0 blocks ==43509== indirectly lost: 0 bytes in 0 blocks ==43509== possibly lost: 0 bytes in 0 blocks ==43509== still reachable: 24 bytes in 2 blocks ==43509== suppressed: 618,737 bytes in 8,242 blocks ==43509== Reachable blocks (those to which a pointer was found) are not shown. ==43509== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==43509== ==43509== For lists of detected and suppressed errors, rerun with: -s ==43509== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 57 from 31)