==39642== Memcheck, a memory error detector ==39642== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==39642== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==39642== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestCreatingAndUsingANewCellMutationStateTutorial -malloc_debug -malloc_dump -memory_info ==39642== Parent PID: 23934 ==39642== ==39642== ==39642== FILE DESCRIPTORS: 9 open (3 std) at exit. ==39642== Open file descriptor 12: ==39642== at 0x10CF807D: pipe (pipe.c:29) ==39642== by 0x196B607D: ??? ==39642== by 0x14C194CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==39642== by 0x10600418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==39642== by 0x10599D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==39642== by 0xF290D38: PetscInitialize (pinit.c:924) ==39642== by 0xF1021D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==39642== by 0xF102227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==39642== by 0x149987: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==39642== by 0x1442D9: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==39642== by 0x146FD2: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==39642== by 0x146E72: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==39642== by 0x147509: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==39642== by 0x1426F5: main (TestCreatingAndUsingANewCellMutationStateTutorial.cpp:19) ==39642== ==39642== Open file descriptor 8: /dev/shm/open_mpi.0000 ==39642== at 0x10CFCA1C: __open_nocancel (open64_nocancel.c:39) ==39642== by 0x10C80BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) ==39642== by 0xF137822: ??? ==39642== by 0xF13796F: ??? ==39642== by 0x14CC06DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==39642== by 0x14CC0938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==39642== by 0x14C76922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==39642== by 0x14C192DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==39642== by 0x10600418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==39642== by 0x10599D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==39642== by 0xF290D38: PetscInitialize (pinit.c:924) ==39642== by 0xF1021D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==39642== by 0xF102227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==39642== by 0x149987: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==39642== by 0x1442D9: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==39642== by 0x146FD2: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==39642== by 0x146E72: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==39642== by 0x147509: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==39642== by 0x1426F5: main (TestCreatingAndUsingANewCellMutationStateTutorial.cpp:19) ==39642== ==39642== Open file descriptor 113: ==39642== ==39642== ==39642== Open file descriptor 110: ==39642== ==39642== ==39642== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestCreatingAndUsingANewCellMutationStateTutorial_valgrind.txt ==39642== ==39642== ==39642== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==39642== ==39642== ==39642== ==39642== HEAP SUMMARY: ==39642== in use at exit: 618,297 bytes in 8,235 blocks ==39642== total heap usage: 4,262,895 allocs, 4,254,660 frees, 1,898,476,882 bytes allocated ==39642== ==39642== LEAK SUMMARY: ==39642== definitely lost: 0 bytes in 0 blocks ==39642== indirectly lost: 0 bytes in 0 blocks ==39642== possibly lost: 0 bytes in 0 blocks ==39642== still reachable: 56 bytes in 3 blocks ==39642== suppressed: 618,241 bytes in 8,232 blocks ==39642== Reachable blocks (those to which a pointer was found) are not shown. ==39642== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==39642== ==39642== For lists of detected and suppressed errors, rerun with: -s ==39642== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 33 from 33)