==25888== Memcheck, a memory error detector ==25888== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==25888== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==25888== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestCaUpdateRules -malloc_debug -malloc_dump -memory_info ==25888== Parent PID: 23976 ==25888== ==25888== ==25888== FILE DESCRIPTORS: 9 open (3 std) at exit. ==25888== Open file descriptor 12: ==25888== at 0xDBDE07D: pipe (pipe.c:29) ==25888== by 0x196B507D: ??? ==25888== by 0x14CBE4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==25888== by 0x1149F418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==25888== by 0x11438D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==25888== by 0x1012FD38: PetscInitialize (pinit.c:924) ==25888== by 0xD49D1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==25888== by 0xD49D227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==25888== by 0x132B46: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==25888== by 0x12BE43: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==25888== by 0x12E998: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==25888== by 0x12E893: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==25888== by 0x12EEA7: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==25888== by 0x12A645: main (TestCaUpdateRules.cpp:18) ==25888== ==25888== Open file descriptor 8: /dev/shm/open_mpi.0000 ==25888== at 0xDBE2A1C: __open_nocancel (open64_nocancel.c:39) ==25888== by 0xDB66BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) ==25888== by 0xD4D2822: ??? ==25888== by 0xD4D296F: ??? ==25888== by 0x14D636DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==25888== by 0x14D63938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==25888== by 0x14D19922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==25888== by 0x14CBE2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==25888== by 0x1149F418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==25888== by 0x11438D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==25888== by 0x1012FD38: PetscInitialize (pinit.c:924) ==25888== by 0xD49D1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==25888== by 0xD49D227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==25888== by 0x132B46: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==25888== by 0x12BE43: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==25888== by 0x12E998: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==25888== by 0x12E893: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==25888== by 0x12EEA7: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==25888== by 0x12A645: main (TestCaUpdateRules.cpp:18) ==25888== ==25888== Open file descriptor 113: ==25888== ==25888== ==25888== Open file descriptor 110: ==25888== ==25888== ==25888== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestCaUpdateRules_valgrind.txt ==25888== ==25888== ==25888== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==25888== ==25888== ==25888== ==25888== HEAP SUMMARY: ==25888== in use at exit: 618,366 bytes in 8,239 blocks ==25888== total heap usage: 55,757 allocs, 47,518 frees, 1,339,201,819 bytes allocated ==25888== ==25888== LEAK SUMMARY: ==25888== definitely lost: 0 bytes in 0 blocks ==25888== indirectly lost: 0 bytes in 0 blocks ==25888== possibly lost: 0 bytes in 0 blocks ==25888== still reachable: 56 bytes in 3 blocks ==25888== suppressed: 618,310 bytes in 8,236 blocks ==25888== Reachable blocks (those to which a pointer was found) are not shown. ==25888== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==25888== ==25888== For lists of detected and suppressed errors, rerun with: -s ==25888== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37)