==40411== Memcheck, a memory error detector ==40411== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==40411== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==40411== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/crypt/test/TestCryptSimulation2dWithMeshBasedCellPopulation -malloc_debug -malloc_dump -memory_info ==40411== Parent PID: 23976 ==40411== ==40411== ==40411== FILE DESCRIPTORS: 9 open (3 std) at exit. ==40411== Open file descriptor 12: ==40411== at 0x111EA07D: pipe (pipe.c:29) ==40411== by 0x1B37607D: ??? ==40411== by 0x165854CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==40411== by 0x12E46418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==40411== by 0x12DDFD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==40411== by 0x11AD6D38: PetscInitialize (pinit.c:924) ==40411== by 0x109C21D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==40411== by 0x109C2227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==40411== by 0x23B368: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==40411== by 0x231839: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==40411== by 0x235F6A: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==40411== by 0x235E0A: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==40411== by 0x2364A1: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==40411== by 0x22FC55: main (TestCryptSimulation2dWithMeshBasedCellPopulation.cpp:19) ==40411== ==40411== Open file descriptor 8: /dev/shm/open_mpi.0000 ==40411== at 0x111EEA1C: __open_nocancel (open64_nocancel.c:39) ==40411== by 0x11172BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) ==40411== by 0x109F7822: ??? ==40411== by 0x109F796F: ??? ==40411== by 0x1662A6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==40411== by 0x1662A938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==40411== by 0x165E0922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==40411== by 0x165852DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==40411== by 0x12E46418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==40411== by 0x12DDFD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==40411== by 0x11AD6D38: PetscInitialize (pinit.c:924) ==40411== by 0x109C21D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==40411== by 0x109C2227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==40411== by 0x23B368: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==40411== by 0x231839: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==40411== by 0x235F6A: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==40411== by 0x235E0A: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==40411== by 0x2364A1: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==40411== by 0x22FC55: main (TestCryptSimulation2dWithMeshBasedCellPopulation.cpp:19) ==40411== ==40411== Open file descriptor 113: ==40411== ==40411== ==40411== Open file descriptor 110: ==40411== ==40411== ==40411== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestCryptSimulation2dWithMeshBasedCellPopulation_valgrind.txt ==40411== ==40411== ==40411== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==40411== ==40411== ==40411== ==40411== HEAP SUMMARY: ==40411== in use at exit: 618,311 bytes in 8,235 blocks ==40411== total heap usage: 6,320,393 allocs, 6,312,158 frees, 2,056,765,367 bytes allocated ==40411== ==40411== LEAK SUMMARY: ==40411== definitely lost: 0 bytes in 0 blocks ==40411== indirectly lost: 0 bytes in 0 blocks ==40411== possibly lost: 0 bytes in 0 blocks ==40411== still reachable: 56 bytes in 3 blocks ==40411== suppressed: 618,255 bytes in 8,232 blocks ==40411== Reachable blocks (those to which a pointer was found) are not shown. ==40411== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==40411== ==40411== For lists of detected and suppressed errors, rerun with: -s ==40411== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 33 from 33)