==39465== Memcheck, a memory error detector ==39465== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==39465== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==39465== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestStepSizeException -malloc_debug -malloc_dump -memory_info ==39465== Parent PID: 23978 ==39465== ==39465== ==39465== FILE DESCRIPTORS: 9 open (3 std) at exit. ==39465== Open file descriptor 12: ==39465== at 0x4CB407D: pipe (pipe.c:29) ==39465== by 0xAEA507D: ??? ==39465== by 0x89BE4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==39465== by 0x626F418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==39465== by 0x6208D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==39465== by 0x4EFFD38: PetscInitialize (pinit.c:924) ==39465== by 0x48FA1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==39465== by 0x48FA227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==39465== by 0x113D54: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==39465== by 0x10F30D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==39465== by 0x111C9E: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==39465== by 0x111B3E: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==39465== by 0x1121D5: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==39465== by 0x10D735: main (TestStepSizeException.cpp:19) ==39465== ==39465== Open file descriptor 8: /dev/shm/open_mpi.0000 ==39465== at 0x4CB8A1C: __open_nocancel (open64_nocancel.c:39) ==39465== by 0x4C3CBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) ==39465== by 0x4934822: ??? ==39465== by 0x493496F: ??? ==39465== by 0x8A636DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==39465== by 0x8A63938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==39465== by 0x8A19922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==39465== by 0x89BE2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==39465== by 0x626F418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==39465== by 0x6208D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==39465== by 0x4EFFD38: PetscInitialize (pinit.c:924) ==39465== by 0x48FA1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==39465== by 0x48FA227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==39465== by 0x113D54: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==39465== by 0x10F30D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==39465== by 0x111C9E: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==39465== by 0x111B3E: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==39465== by 0x1121D5: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==39465== by 0x10D735: main (TestStepSizeException.cpp:19) ==39465== ==39465== Open file descriptor 113: ==39465== ==39465== ==39465== Open file descriptor 110: ==39465== ==39465== ==39465== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestStepSizeException_valgrind.txt ==39465== ==39465== ==39465== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==39465== ==39465== ==39465== ==39465== HEAP SUMMARY: ==39465== in use at exit: 617,874 bytes in 8,238 blocks ==39465== total heap usage: 44,914 allocs, 36,676 frees, 1,338,159,404 bytes allocated ==39465== ==39465== LEAK SUMMARY: ==39465== definitely lost: 0 bytes in 0 blocks ==39465== indirectly lost: 0 bytes in 0 blocks ==39465== possibly lost: 0 bytes in 0 blocks ==39465== still reachable: 24 bytes in 2 blocks ==39465== suppressed: 617,850 bytes in 8,236 blocks ==39465== Reachable blocks (those to which a pointer was found) are not shown. ==39465== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==39465== ==39465== For lists of detected and suppressed errors, rerun with: -s ==39465== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 34)