==39940== Memcheck, a memory error detector ==39940== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==39940== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==39940== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestRunningContactInhibitionSimulationsTutorial -malloc_debug -malloc_dump -memory_info ==39940== Parent PID: 24062 ==39940== ==39940== ==39940== FILE DESCRIPTORS: 9 open (3 std) at exit. ==39940== Open file descriptor 12: ==39940== at 0x10D9507D: pipe (pipe.c:29) ==39940== by 0x196AB07D: ??? ==39940== by 0x14C134CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==39940== by 0x105B6418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==39940== by 0x1054FD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==39940== by 0xF223D38: PetscInitialize (pinit.c:924) ==39940== by 0xF0FA1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==39940== by 0xF0FA227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==39940== by 0x128209: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==39940== by 0x123673: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==39940== by 0x1259CE: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==39940== by 0x1258CA: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==39940== by 0x125EDD: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==39940== by 0x121E75: main (TestRunningContactInhibitionSimulationsTutorial.cpp:18) ==39940== ==39940== Open file descriptor 8: /dev/shm/open_mpi.0000 ==39940== at 0x10D99A1C: __open_nocancel (open64_nocancel.c:39) ==39940== by 0x10D1DBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) ==39940== by 0x104B8822: ??? ==39940== by 0x104B896F: ??? ==39940== by 0x14CB86DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==39940== by 0x14CB8938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==39940== by 0x14C6E922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==39940== by 0x14C132DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==39940== by 0x105B6418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==39940== by 0x1054FD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==39940== by 0xF223D38: PetscInitialize (pinit.c:924) ==39940== by 0xF0FA1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==39940== by 0xF0FA227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==39940== by 0x128209: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==39940== by 0x123673: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==39940== by 0x1259CE: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==39940== by 0x1258CA: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==39940== by 0x125EDD: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==39940== by 0x121E75: main (TestRunningContactInhibitionSimulationsTutorial.cpp:18) ==39940== ==39940== Open file descriptor 113: ==39940== ==39940== ==39940== Open file descriptor 110: ==39940== ==39940== ==39940== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestRunningContactInhibitionSimulationsTutorial_valgrind.txt ==39940== ==39940== ==39940== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==39940== ==39940== ==39940== ==39940== HEAP SUMMARY: ==39940== in use at exit: 618,295 bytes in 8,235 blocks ==39940== total heap usage: 11,072,726 allocs, 11,064,491 frees, 4,765,710,928 bytes allocated ==39940== ==39940== LEAK SUMMARY: ==39940== definitely lost: 0 bytes in 0 blocks ==39940== indirectly lost: 0 bytes in 0 blocks ==39940== possibly lost: 0 bytes in 0 blocks ==39940== still reachable: 56 bytes in 3 blocks ==39940== suppressed: 618,239 bytes in 8,232 blocks ==39940== Reachable blocks (those to which a pointer was found) are not shown. ==39940== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==39940== ==39940== For lists of detected and suppressed errors, rerun with: -s ==39940== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 31 from 31)