==39859== Memcheck, a memory error detector ==39859== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==39859== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==39859== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestCreatingAndUsingANewCellPopulationBoundaryConditionTutorial -malloc_debug -malloc_dump -memory_info ==39859== Parent PID: 24042 ==39859== ==39859== ==39859== FILE DESCRIPTORS: 9 open (3 std) at exit. ==39859== Open file descriptor 12: ==39859== at 0x10CF007D: pipe (pipe.c:29) ==39859== by 0x196AB07D: ??? ==39859== by 0x14C134CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==39859== by 0x105F8418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==39859== by 0x10591D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==39859== by 0xF288D38: PetscInitialize (pinit.c:924) ==39859== by 0xF0FA1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==39859== by 0xF0FA227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==39859== by 0x144105: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==39859== by 0x13EF9F: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==39859== by 0x141686: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==39859== by 0x141582: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==39859== by 0x141B95: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==39859== by 0x13D795: main (TestCreatingAndUsingANewCellPopulationBoundaryConditionTutorial.cpp:18) ==39859== ==39859== Open file descriptor 8: /dev/shm/open_mpi.0000 ==39859== at 0x10CF4A1C: __open_nocancel (open64_nocancel.c:39) ==39859== by 0x10C78BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) ==39859== by 0xF13A822: ??? ==39859== by 0xF13A96F: ??? ==39859== by 0x14CB86DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==39859== by 0x14CB8938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==39859== by 0x14C6E922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==39859== by 0x14C132DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==39859== by 0x105F8418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==39859== by 0x10591D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==39859== by 0xF288D38: PetscInitialize (pinit.c:924) ==39859== by 0xF0FA1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==39859== by 0xF0FA227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==39859== by 0x144105: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==39859== by 0x13EF9F: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==39859== by 0x141686: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==39859== by 0x141582: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==39859== by 0x141B95: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==39859== by 0x13D795: main (TestCreatingAndUsingANewCellPopulationBoundaryConditionTutorial.cpp:18) ==39859== ==39859== Open file descriptor 113: ==39859== ==39859== ==39859== Open file descriptor 110: ==39859== ==39859== ==39859== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestCreatingAndUsingANewCellPopulationBoundaryConditionTutorial_valgrind.txt ==39859== ==39859== ==39859== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==39859== ==39859== ==39859== ==39859== HEAP SUMMARY: ==39859== in use at exit: 618,366 bytes in 8,239 blocks ==39859== total heap usage: 426,444 allocs, 418,205 frees, 1,393,460,992 bytes allocated ==39859== ==39859== LEAK SUMMARY: ==39859== definitely lost: 0 bytes in 0 blocks ==39859== indirectly lost: 0 bytes in 0 blocks ==39859== possibly lost: 0 bytes in 0 blocks ==39859== still reachable: 56 bytes in 3 blocks ==39859== suppressed: 618,310 bytes in 8,236 blocks ==39859== Reachable blocks (those to which a pointer was found) are not shown. ==39859== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==39859== ==39859== For lists of detected and suppressed errors, rerun with: -s ==39859== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37)