==40556== Memcheck, a memory error detector ==40556== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==40556== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==40556== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/crypt/test/TestCryptSimulation2dWithVertexBasedCellPopulation -malloc_debug -malloc_dump -memory_info ==40556== Parent PID: 23978 ==40556== ==40556== ==40556== FILE DESCRIPTORS: 9 open (3 std) at exit. ==40556== Open file descriptor 12: ==40556== at 0x125B007D: pipe (pipe.c:29) ==40556== by 0x1B36B07D: ??? ==40556== by 0x164D24CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==40556== by 0x11EB8418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==40556== by 0x11E51D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==40556== by 0x10B48D38: PetscInitialize (pinit.c:924) ==40556== by 0x109BA1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==40556== by 0x109BA227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==40556== by 0x224461: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==40556== by 0x21BE79: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==40556== by 0x21FA80: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==40556== by 0x21F920: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==40556== by 0x21FFB7: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==40556== by 0x21A295: main (TestCryptSimulation2dWithVertexBasedCellPopulation.cpp:19) ==40556== ==40556== Open file descriptor 8: /dev/shm/open_mpi.0000 ==40556== at 0x125B4A1C: __open_nocancel (open64_nocancel.c:39) ==40556== by 0x12538BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) ==40556== by 0x109F4822: ??? ==40556== by 0x109F496F: ??? ==40556== by 0x165776DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==40556== by 0x16577938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==40556== by 0x1652D922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==40556== by 0x164D22DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==40556== by 0x11EB8418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==40556== by 0x11E51D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==40556== by 0x10B48D38: PetscInitialize (pinit.c:924) ==40556== by 0x109BA1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==40556== by 0x109BA227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==40556== by 0x224461: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==40556== by 0x21BE79: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==40556== by 0x21FA80: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==40556== by 0x21F920: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==40556== by 0x21FFB7: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==40556== by 0x21A295: main (TestCryptSimulation2dWithVertexBasedCellPopulation.cpp:19) ==40556== ==40556== Open file descriptor 113: ==40556== ==40556== ==40556== Open file descriptor 110: ==40556== ==40556== ==40556== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestCryptSimulation2dWithVertexBasedCellPopulation_valgrind.txt ==40556== ==40556== ==40556== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==40556== ==40556== ==40556== ==40556== HEAP SUMMARY: ==40556== in use at exit: 618,311 bytes in 8,235 blocks ==40556== total heap usage: 3,713,952 allocs, 3,705,717 frees, 1,620,332,760 bytes allocated ==40556== ==40556== LEAK SUMMARY: ==40556== definitely lost: 0 bytes in 0 blocks ==40556== indirectly lost: 0 bytes in 0 blocks ==40556== possibly lost: 0 bytes in 0 blocks ==40556== still reachable: 56 bytes in 3 blocks ==40556== suppressed: 618,255 bytes in 8,232 blocks ==40556== Reachable blocks (those to which a pointer was found) are not shown. ==40556== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==40556== ==40556== For lists of detected and suppressed errors, rerun with: -s ==40556== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 33 from 33)