==26496== Memcheck, a memory error detector ==26496== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==26496== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==26496== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestOffLatticeSimulation3d -malloc_debug -malloc_dump -memory_info ==26496== Parent PID: 24011 ==26496== ==26496== ==26496== FILE DESCRIPTORS: 9 open (3 std) at exit. ==26496== Open file descriptor 12: ==26496== at 0x10DD707D: pipe (pipe.c:29) ==26496== by 0x196AB07D: ??? ==26496== by 0x14C134CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==26496== by 0x105F8418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==26496== by 0x10591D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==26496== by 0xF288D38: PetscInitialize (pinit.c:924) ==26496== by 0xF0FA1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==26496== by 0xF0FA227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==26496== by 0x1FF4E9: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==26496== by 0x1F945F: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==26496== by 0x1FC774: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==26496== by 0x1FC670: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==26496== by 0x1FCC83: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==26496== by 0x1F7C55: main (TestOffLatticeSimulation3d.cpp:18) ==26496== ==26496== Open file descriptor 8: /dev/shm/open_mpi.0000 ==26496== at 0x10DDBA1C: __open_nocancel (open64_nocancel.c:39) ==26496== by 0x10D5FBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) ==26496== by 0xF134822: ??? ==26496== by 0xF13496F: ??? ==26496== by 0x14CB86DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==26496== by 0x14CB8938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==26496== by 0x14C6E922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==26496== by 0x14C132DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==26496== by 0x105F8418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==26496== by 0x10591D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==26496== by 0xF288D38: PetscInitialize (pinit.c:924) ==26496== by 0xF0FA1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==26496== by 0xF0FA227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==26496== by 0x1FF4E9: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==26496== by 0x1F945F: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==26496== by 0x1FC774: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==26496== by 0x1FC670: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==26496== by 0x1FCC83: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==26496== by 0x1F7C55: main (TestOffLatticeSimulation3d.cpp:18) ==26496== ==26496== Open file descriptor 116: ==26496== ==26496== ==26496== Open file descriptor 113: ==26496== ==26496== ==26496== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestOffLatticeSimulation3d_valgrind.txt ==26496== ==26496== ==26496== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==26496== ==26496== ==26496== ==26496== HEAP SUMMARY: ==26496== in use at exit: 618,366 bytes in 8,239 blocks ==26496== total heap usage: 853,792 allocs, 845,553 frees, 1,503,649,468 bytes allocated ==26496== ==26496== LEAK SUMMARY: ==26496== definitely lost: 0 bytes in 0 blocks ==26496== indirectly lost: 0 bytes in 0 blocks ==26496== possibly lost: 0 bytes in 0 blocks ==26496== still reachable: 56 bytes in 3 blocks ==26496== suppressed: 618,310 bytes in 8,236 blocks ==26496== Reachable blocks (those to which a pointer was found) are not shown. ==26496== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==26496== ==26496== For lists of detected and suppressed errors, rerun with: -s ==26496== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37)