==40342== Memcheck, a memory error detector ==40342== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==40342== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==40342== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/crypt/test/TestMirams2010WntOdeSystem -malloc_debug -malloc_dump -memory_info ==40342== Parent PID: 24025 ==40342== ==40342== ==40342== FILE DESCRIPTORS: 9 open (3 std) at exit. ==40342== Open file descriptor 12: ==40342== at 0xF39B07D: pipe (pipe.c:29) ==40342== by 0x1B36D07D: ??? ==40342== by 0x165704CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==40342== by 0x12E3E418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==40342== by 0x12DD7D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==40342== by 0x11ACED38: PetscInitialize (pinit.c:924) ==40342== by 0xEFA11D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==40342== by 0xEFA1227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==40342== by 0x1261EE: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==40342== by 0x12141B: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==40342== by 0x123B60: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==40342== by 0x123A5C: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==40342== by 0x12406F: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==40342== by 0x11F065: main (TestMirams2010WntOdeSystem.cpp:18) ==40342== ==40342== Open file descriptor 8: /dev/shm/open_mpi.0000 ==40342== at 0xF39FA1C: __open_nocancel (open64_nocancel.c:39) ==40342== by 0xF323BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) ==40342== by 0xEFDB822: ??? ==40342== by 0xEFDB96F: ??? ==40342== by 0x166156DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==40342== by 0x16615938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==40342== by 0x165CB922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==40342== by 0x165702DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==40342== by 0x12E3E418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==40342== by 0x12DD7D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==40342== by 0x11ACED38: PetscInitialize (pinit.c:924) ==40342== by 0xEFA11D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==40342== by 0xEFA1227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==40342== by 0x1261EE: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==40342== by 0x12141B: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==40342== by 0x123B60: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==40342== by 0x123A5C: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==40342== by 0x12406F: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==40342== by 0x11F065: main (TestMirams2010WntOdeSystem.cpp:18) ==40342== ==40342== Open file descriptor 113: ==40342== ==40342== ==40342== Open file descriptor 110: ==40342== ==40342== ==40342== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestMirams2010WntOdeSystem_valgrind.txt ==40342== ==40342== ==40342== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==40342== ==40342== ==40342== ==40342== HEAP SUMMARY: ==40342== in use at exit: 618,386 bytes in 8,239 blocks ==40342== total heap usage: 66,833 allocs, 58,594 frees, 1,340,372,689 bytes allocated ==40342== ==40342== LEAK SUMMARY: ==40342== definitely lost: 0 bytes in 0 blocks ==40342== indirectly lost: 0 bytes in 0 blocks ==40342== possibly lost: 0 bytes in 0 blocks ==40342== still reachable: 56 bytes in 3 blocks ==40342== suppressed: 618,330 bytes in 8,236 blocks ==40342== Reachable blocks (those to which a pointer was found) are not shown. ==40342== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==40342== ==40342== For lists of detected and suppressed errors, rerun with: -s ==40342== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37)