==40147== Memcheck, a memory error detector ==40147== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==40147== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==40147== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestRunningNodeBasedSimulationsTutorial -malloc_debug -malloc_dump -memory_info ==40147== Parent PID: 24038 ==40147== ==40147== ==40147== FILE DESCRIPTORS: 9 open (3 std) at exit. ==40147== Open file descriptor 12: ==40147== at 0xF8DE07D: pipe (pipe.c:29) ==40147== by 0x196AB07D: ??? ==40147== by 0x14CB14CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==40147== by 0x1157E418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==40147== by 0x11517D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==40147== by 0x1020ED38: PetscInitialize (pinit.c:924) ==40147== by 0xF0FA1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==40147== by 0xF0FA227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==40147== by 0x12C638: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==40147== by 0x127BAD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==40147== by 0x12A25C: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==40147== by 0x12A0FC: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==40147== by 0x12A793: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==40147== by 0x125FD5: main (TestRunningNodeBasedSimulationsTutorial.cpp:19) ==40147== ==40147== Open file descriptor 8: /dev/shm/open_mpi.0000 ==40147== at 0xF8E2A1C: __open_nocancel (open64_nocancel.c:39) ==40147== by 0xF866BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) ==40147== by 0xF134822: ??? ==40147== by 0xF13496F: ??? ==40147== by 0x14D566DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==40147== by 0x14D56938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==40147== by 0x14D0C922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==40147== by 0x14CB12DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==40147== by 0x1157E418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==40147== by 0x11517D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==40147== by 0x1020ED38: PetscInitialize (pinit.c:924) ==40147== by 0xF0FA1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==40147== by 0xF0FA227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==40147== by 0x12C638: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==40147== by 0x127BAD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==40147== by 0x12A25C: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==40147== by 0x12A0FC: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==40147== by 0x12A793: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==40147== by 0x125FD5: main (TestRunningNodeBasedSimulationsTutorial.cpp:19) ==40147== ==40147== Open file descriptor 113: ==40147== ==40147== ==40147== Open file descriptor 110: ==40147== ==40147== ==40147== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestRunningNodeBasedSimulationsTutorial_valgrind.txt ==40147== ==40147== ==40147== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==40147== ==40147== ==40147== ==40147== HEAP SUMMARY: ==40147== in use at exit: 618,370 bytes in 8,239 blocks ==40147== total heap usage: 672,361 allocs, 664,122 frees, 1,725,083,560 bytes allocated ==40147== ==40147== LEAK SUMMARY: ==40147== definitely lost: 0 bytes in 0 blocks ==40147== indirectly lost: 0 bytes in 0 blocks ==40147== possibly lost: 0 bytes in 0 blocks ==40147== still reachable: 56 bytes in 3 blocks ==40147== suppressed: 618,314 bytes in 8,236 blocks ==40147== Reachable blocks (those to which a pointer was found) are not shown. ==40147== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==40147== ==40147== For lists of detected and suppressed errors, rerun with: -s ==40147== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37)