==39962== Memcheck, a memory error detector ==39962== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==39962== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==39962== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestRunningDeltaNotchSimulationsTutorial -malloc_debug -malloc_dump -memory_info ==39962== Parent PID: 24035 ==39962== ==39962== ==39962== FILE DESCRIPTORS: 9 open (3 std) at exit. ==39962== Open file descriptor 12: ==39962== at 0xF7F707D: pipe (pipe.c:29) ==39962== by 0x196AB07D: ??? ==39962== by 0x14CB14CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==39962== by 0x11497418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==39962== by 0x11430D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==39962== by 0x10125D38: PetscInitialize (pinit.c:924) ==39962== by 0xF0FA1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==39962== by 0xF0FA227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==39962== by 0x122D30: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==39962== by 0x11E513: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==39962== by 0x120830: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==39962== by 0x12072B: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==39962== by 0x120D3F: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==39962== by 0x11CD15: main (TestRunningDeltaNotchSimulationsTutorial.cpp:18) ==39962== ==39962== Open file descriptor 8: /dev/shm/open_mpi.0000 ==39962== at 0xF7FBA1C: __open_nocancel (open64_nocancel.c:39) ==39962== by 0xF77FBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) ==39962== by 0xF134822: ??? ==39962== by 0xF13496F: ??? ==39962== by 0x14D566DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==39962== by 0x14D56938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==39962== by 0x14D0C922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==39962== by 0x14CB12DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==39962== by 0x11497418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==39962== by 0x11430D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==39962== by 0x10125D38: PetscInitialize (pinit.c:924) ==39962== by 0xF0FA1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==39962== by 0xF0FA227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==39962== by 0x122D30: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==39962== by 0x11E513: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==39962== by 0x120830: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==39962== by 0x12072B: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==39962== by 0x120D3F: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==39962== by 0x11CD15: main (TestRunningDeltaNotchSimulationsTutorial.cpp:18) ==39962== ==39962== Open file descriptor 114: ==39962== ==39962== ==39962== Open file descriptor 111: ==39962== ==39962== ==39962== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestRunningDeltaNotchSimulationsTutorial_valgrind.txt ==39962== ==39962== ==39962== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==39962== ==39962== ==39962== ==39962== HEAP SUMMARY: ==39962== in use at exit: 618,295 bytes in 8,235 blocks ==39962== total heap usage: 5,177,215 allocs, 5,168,980 frees, 1,778,171,613 bytes allocated ==39962== ==39962== LEAK SUMMARY: ==39962== definitely lost: 0 bytes in 0 blocks ==39962== indirectly lost: 0 bytes in 0 blocks ==39962== possibly lost: 0 bytes in 0 blocks ==39962== still reachable: 56 bytes in 3 blocks ==39962== suppressed: 618,239 bytes in 8,232 blocks ==39962== Reachable blocks (those to which a pointer was found) are not shown. ==39962== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==39962== ==39962== For lists of detected and suppressed errors, rerun with: -s ==39962== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 33 from 33)