==40487== Memcheck, a memory error detector ==40487== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==40487== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==40487== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/crypt/test/TestCryptSimulation1d -malloc_debug -malloc_dump -memory_info ==40487== Parent PID: 24026 ==40487== ==40487== ==40487== FILE DESCRIPTORS: 9 open (3 std) at exit. ==40487== Open file descriptor 12: ==40487== at 0x125B007D: pipe (pipe.c:29) ==40487== by 0x1B36B07D: ??? ==40487== by 0x164D24CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==40487== by 0x11EB8418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==40487== by 0x11E51D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==40487== by 0x10B48D38: PetscInitialize (pinit.c:924) ==40487== by 0x109BA1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==40487== by 0x109BA227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==40487== by 0x2254A3: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==40487== by 0x21CB9F: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==40487== by 0x22067C: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==40487== by 0x220577: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==40487== by 0x220B8B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==40487== by 0x21B395: main (TestCryptSimulation1d.cpp:18) ==40487== ==40487== Open file descriptor 8: /dev/shm/open_mpi.0000 ==40487== at 0x125B4A1C: __open_nocancel (open64_nocancel.c:39) ==40487== by 0x12538BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) ==40487== by 0x109F4822: ??? ==40487== by 0x109F496F: ??? ==40487== by 0x165776DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==40487== by 0x16577938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==40487== by 0x1652D922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==40487== by 0x164D22DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==40487== by 0x11EB8418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==40487== by 0x11E51D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==40487== by 0x10B48D38: PetscInitialize (pinit.c:924) ==40487== by 0x109BA1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==40487== by 0x109BA227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==40487== by 0x2254A3: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==40487== by 0x21CB9F: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==40487== by 0x22067C: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==40487== by 0x220577: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==40487== by 0x220B8B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==40487== by 0x21B395: main (TestCryptSimulation1d.cpp:18) ==40487== ==40487== Open file descriptor 113: ==40487== ==40487== ==40487== Open file descriptor 110: ==40487== ==40487== ==40487== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestCryptSimulation1d_valgrind.txt ==40487== ==40487== ==40487== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==40487== ==40487== ==40487== ==40487== HEAP SUMMARY: ==40487== in use at exit: 618,313 bytes in 8,235 blocks ==40487== total heap usage: 4,119,323 allocs, 4,111,088 frees, 1,972,573,940 bytes allocated ==40487== ==40487== LEAK SUMMARY: ==40487== definitely lost: 0 bytes in 0 blocks ==40487== indirectly lost: 0 bytes in 0 blocks ==40487== possibly lost: 0 bytes in 0 blocks ==40487== still reachable: 56 bytes in 3 blocks ==40487== suppressed: 618,257 bytes in 8,232 blocks ==40487== Reachable blocks (those to which a pointer was found) are not shown. ==40487== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==40487== ==40487== For lists of detected and suppressed errors, rerun with: -s ==40487== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 33 from 33)