==28328== Memcheck, a memory error detector ==28328== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==28328== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==28328== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestOnLatticeSimulationWithPdes -malloc_debug -malloc_dump -memory_info ==28328== Parent PID: 24041 ==28328== ==28328== ==28328== FILE DESCRIPTORS: 9 open (3 std) at exit. ==28328== Open file descriptor 12: ==28328== at 0xFC7D07D: pipe (pipe.c:29) ==28328== by 0x196AA07D: ??? ==28328== by 0x14CB44CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==28328== by 0x1157E418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==28328== by 0x11517D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==28328== by 0x1020ED38: PetscInitialize (pinit.c:924) ==28328== by 0xF4971D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==28328== by 0xF497227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==28328== by 0x135832: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==28328== by 0x1303C3: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==28328== by 0x133048: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==28328== by 0x132EE8: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==28328== by 0x13357F: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==28328== by 0x12E7B5: main (TestOnLatticeSimulationWithPdes.cpp:19) ==28328== ==28328== Open file descriptor 8: /dev/shm/open_mpi.0000 ==28328== at 0xFC81A1C: __open_nocancel (open64_nocancel.c:39) ==28328== by 0xFC05BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) ==28328== by 0xF4D1822: ??? ==28328== by 0xF4D196F: ??? ==28328== by 0x14D596DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==28328== by 0x14D59938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==28328== by 0x14D0F922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==28328== by 0x14CB42DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==28328== by 0x1157E418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==28328== by 0x11517D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==28328== by 0x1020ED38: PetscInitialize (pinit.c:924) ==28328== by 0xF4971D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==28328== by 0xF497227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==28328== by 0x135832: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==28328== by 0x1303C3: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==28328== by 0x133048: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==28328== by 0x132EE8: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==28328== by 0x13357F: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==28328== by 0x12E7B5: main (TestOnLatticeSimulationWithPdes.cpp:19) ==28328== ==28328== Open file descriptor 113: ==28328== ==28328== ==28328== Open file descriptor 110: ==28328== ==28328== ==28328== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestOnLatticeSimulationWithPdes_valgrind.txt ==28328== ==28328== ==28328== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==28328== ==28328== ==28328== ==28328== HEAP SUMMARY: ==28328== in use at exit: 618,297 bytes in 8,235 blocks ==28328== total heap usage: 2,356,889 allocs, 2,348,654 frees, 1,775,836,262 bytes allocated ==28328== ==28328== LEAK SUMMARY: ==28328== definitely lost: 0 bytes in 0 blocks ==28328== indirectly lost: 0 bytes in 0 blocks ==28328== possibly lost: 0 bytes in 0 blocks ==28328== still reachable: 56 bytes in 3 blocks ==28328== suppressed: 618,241 bytes in 8,232 blocks ==28328== Reachable blocks (those to which a pointer was found) are not shown. ==28328== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==28328== ==28328== For lists of detected and suppressed errors, rerun with: -s ==28328== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 33 from 33)