==27087== Memcheck, a memory error detector ==27087== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==27087== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==27087== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestOffLatticeSimulationWithPdes -malloc_debug -malloc_dump -memory_info ==27087== Parent PID: 24098 ==27087== ==27087== ==27087== FILE DESCRIPTORS: 9 open (3 std) at exit. ==27087== Open file descriptor 12: ==27087== at 0xFCBF07D: pipe (pipe.c:29) ==27087== by 0x196AA07D: ??? ==27087== by 0x14CB44CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==27087== by 0x1157E418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==27087== by 0x11517D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==27087== by 0x1020ED38: PetscInitialize (pinit.c:924) ==27087== by 0xF4971D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==27087== by 0xF497227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==27087== by 0x226536: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==27087== by 0x21FB71: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==27087== by 0x2236DC: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==27087== by 0x22357C: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==27087== by 0x223C13: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==27087== by 0x21DF55: main (TestOffLatticeSimulationWithPdes.cpp:19) ==27087== ==27087== Open file descriptor 8: /dev/shm/open_mpi.0000 ==27087== at 0xFCC3A1C: __open_nocancel (open64_nocancel.c:39) ==27087== by 0xFC47BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) ==27087== by 0xF4D1822: ??? ==27087== by 0xF4D196F: ??? ==27087== by 0x14D596DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==27087== by 0x14D59938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==27087== by 0x14D0F922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==27087== by 0x14CB42DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==27087== by 0x1157E418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==27087== by 0x11517D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==27087== by 0x1020ED38: PetscInitialize (pinit.c:924) ==27087== by 0xF4971D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==27087== by 0xF497227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==27087== by 0x226536: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==27087== by 0x21FB71: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==27087== by 0x2236DC: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==27087== by 0x22357C: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==27087== by 0x223C13: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==27087== by 0x21DF55: main (TestOffLatticeSimulationWithPdes.cpp:19) ==27087== ==27087== Open file descriptor 113: ==27087== ==27087== ==27087== Open file descriptor 110: ==27087== ==27087== ==27087== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestOffLatticeSimulationWithPdes_valgrind.txt ==27087== ==27087== ==27087== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==27087== ==27087== ==27087== ==27087== HEAP SUMMARY: ==27087== in use at exit: 618,297 bytes in 8,235 blocks ==27087== total heap usage: 7,487,375 allocs, 7,479,140 frees, 2,641,934,578 bytes allocated ==27087== ==27087== LEAK SUMMARY: ==27087== definitely lost: 0 bytes in 0 blocks ==27087== indirectly lost: 0 bytes in 0 blocks ==27087== possibly lost: 0 bytes in 0 blocks ==27087== still reachable: 56 bytes in 3 blocks ==27087== suppressed: 618,241 bytes in 8,232 blocks ==27087== Reachable blocks (those to which a pointer was found) are not shown. ==27087== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==27087== ==27087== For lists of detected and suppressed errors, rerun with: -s ==27087== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 33 from 33)