==40372== Memcheck, a memory error detector ==40372== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==40372== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==40372== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/crypt/test/TestVanLeeuwen2009WntSwatCellCycleOdeSystem -malloc_debug -malloc_dump -memory_info ==40372== Parent PID: 24025 ==40372== ==40372== ==40372== FILE DESCRIPTORS: 9 open (3 std) at exit. ==40372== Open file descriptor 12: ==40372== at 0x127F207D: pipe (pipe.c:29) ==40372== by 0x1B36B07D: ??? ==40372== by 0x165234CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==40372== by 0x120FA418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==40372== by 0x12093D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==40372== by 0x10D8AD38: PetscInitialize (pinit.c:924) ==40372== by 0x10BFC1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==40372== by 0x10BFC227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==40372== by 0x136AAD: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==40372== by 0x13133D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==40372== by 0x1340EC: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==40372== by 0x133F8C: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==40372== by 0x134623: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==40372== by 0x12F765: main (TestVanLeeuwen2009WntSwatCellCycleOdeSystem.cpp:19) ==40372== ==40372== Open file descriptor 8: /dev/shm/open_mpi.0000 ==40372== at 0x127F6A1C: __open_nocancel (open64_nocancel.c:39) ==40372== by 0x1277ABCF: shm_open@@GLIBC_2.34 (shm_open.c:40) ==40372== by 0x10C36822: ??? ==40372== by 0x10C3696F: ??? ==40372== by 0x165C86DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==40372== by 0x165C8938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==40372== by 0x1657E922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==40372== by 0x165232DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==40372== by 0x120FA418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==40372== by 0x12093D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==40372== by 0x10D8AD38: PetscInitialize (pinit.c:924) ==40372== by 0x10BFC1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==40372== by 0x10BFC227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==40372== by 0x136AAD: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==40372== by 0x13133D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==40372== by 0x1340EC: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==40372== by 0x133F8C: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==40372== by 0x134623: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==40372== by 0x12F765: main (TestVanLeeuwen2009WntSwatCellCycleOdeSystem.cpp:19) ==40372== ==40372== Open file descriptor 113: ==40372== ==40372== ==40372== Open file descriptor 110: ==40372== ==40372== ==40372== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestVanLeeuwen2009WntSwatCellCycleOdeSystem_valgrind.txt ==40372== ==40372== ==40372== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==40372== ==40372== ==40372== ==40372== HEAP SUMMARY: ==40372== in use at exit: 618,350 bytes in 8,238 blocks ==40372== total heap usage: 519,307 allocs, 511,069 frees, 1,547,101,407 bytes allocated ==40372== ==40372== LEAK SUMMARY: ==40372== definitely lost: 0 bytes in 0 blocks ==40372== indirectly lost: 0 bytes in 0 blocks ==40372== possibly lost: 0 bytes in 0 blocks ==40372== still reachable: 24 bytes in 2 blocks ==40372== suppressed: 618,326 bytes in 8,236 blocks ==40372== Reachable blocks (those to which a pointer was found) are not shown. ==40372== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==40372== ==40372== For lists of detected and suppressed errors, rerun with: -s ==40372== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37)