==39747== Memcheck, a memory error detector ==39747== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==39747== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==39747== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestCreatingAndUsingANewCellPopulationBoundaryConditionTutorial -malloc_debug -malloc_dump -memory_info ==39747== Parent PID: 23961 ==39747== ==39747== ==39747== FILE DESCRIPTORS: 9 open (3 std) at exit. ==39747== Open file descriptor 12: ==39747== at 0x10CF007D: pipe (pipe.c:29) ==39747== by 0x196AB07D: ??? ==39747== by 0x14C134CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==39747== by 0x105F8418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==39747== by 0x10591D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==39747== by 0xF288D38: PetscInitialize (pinit.c:924) ==39747== by 0xF0FA1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==39747== by 0xF0FA227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==39747== by 0x144105: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==39747== by 0x13EF9F: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==39747== by 0x141686: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==39747== by 0x141582: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==39747== by 0x141B95: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==39747== by 0x13D795: main (TestCreatingAndUsingANewCellPopulationBoundaryConditionTutorial.cpp:18) ==39747== ==39747== Open file descriptor 8: /dev/shm/open_mpi.0000 ==39747== at 0x10CF4A1C: __open_nocancel (open64_nocancel.c:39) ==39747== by 0x10C78BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) ==39747== by 0xF134822: ??? ==39747== by 0xF13496F: ??? ==39747== by 0x14CB86DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==39747== by 0x14CB8938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==39747== by 0x14C6E922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==39747== by 0x14C132DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==39747== by 0x105F8418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==39747== by 0x10591D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==39747== by 0xF288D38: PetscInitialize (pinit.c:924) ==39747== by 0xF0FA1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==39747== by 0xF0FA227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==39747== by 0x144105: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==39747== by 0x13EF9F: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==39747== by 0x141686: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==39747== by 0x141582: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==39747== by 0x141B95: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==39747== by 0x13D795: main (TestCreatingAndUsingANewCellPopulationBoundaryConditionTutorial.cpp:18) ==39747== ==39747== Open file descriptor 113: ==39747== ==39747== ==39747== Open file descriptor 110: ==39747== ==39747== ==39747== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestCreatingAndUsingANewCellPopulationBoundaryConditionTutorial_valgrind.txt ==39747== ==39747== ==39747== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==39747== ==39747== ==39747== ==39747== HEAP SUMMARY: ==39747== in use at exit: 618,366 bytes in 8,239 blocks ==39747== total heap usage: 426,445 allocs, 418,206 frees, 1,393,461,167 bytes allocated ==39747== ==39747== LEAK SUMMARY: ==39747== definitely lost: 0 bytes in 0 blocks ==39747== indirectly lost: 0 bytes in 0 blocks ==39747== possibly lost: 0 bytes in 0 blocks ==39747== still reachable: 56 bytes in 3 blocks ==39747== suppressed: 618,310 bytes in 8,236 blocks ==39747== Reachable blocks (those to which a pointer was found) are not shown. ==39747== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==39747== ==39747== For lists of detected and suppressed errors, rerun with: -s ==39747== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37)