==24217== Memcheck, a memory error detector ==24217== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==24217== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==24217== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/io/test/TestHdf5DataReader -malloc_debug -malloc_dump -memory_info ==24217== Parent PID: 23961 ==24217== ==24217== ==24217== FILE DESCRIPTORS: 9 open (3 std) at exit. ==24217== Open file descriptor 12: ==24217== at 0x645A07D: pipe (pipe.c:29) ==24217== by 0xAF1807D: ??? ==24217== by 0x8F3D4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==24217== by 0x6655418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==24217== by 0x65EED7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==24217== by 0x4A96D38: PetscInitialize (pinit.c:924) ==24217== by 0x496D1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==24217== by 0x496D227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==24217== by 0x11BB1C: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==24217== by 0x117033: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==24217== by 0x119B8A: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==24217== by 0x119A2A: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==24217== by 0x11A0C1: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==24217== by 0x1151B5: main (TestHdf5DataReader.cpp:19) ==24217== ==24217== Open file descriptor 8: /dev/shm/open_mpi.0000 ==24217== at 0x645EA1C: __open_nocancel (open64_nocancel.c:39) ==24217== by 0x63E2BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) ==24217== by 0x5D25822: ??? ==24217== by 0x5D2596F: ??? ==24217== by 0x8FE26DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==24217== by 0x8FE2938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==24217== by 0x8F98922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==24217== by 0x8F3D2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==24217== by 0x6655418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==24217== by 0x65EED7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==24217== by 0x4A96D38: PetscInitialize (pinit.c:924) ==24217== by 0x496D1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==24217== by 0x496D227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==24217== by 0x11BB1C: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==24217== by 0x117033: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==24217== by 0x119B8A: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==24217== by 0x119A2A: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==24217== by 0x11A0C1: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==24217== by 0x1151B5: main (TestHdf5DataReader.cpp:19) ==24217== ==24217== Open file descriptor 113: ==24217== ==24217== ==24217== Open file descriptor 110: ==24217== ==24217== ==24217== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestHdf5DataReader_valgrind.txt ==24217== ==24217== ==24217== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==24217== ==24217== ==24217== ==24217== HEAP SUMMARY: ==24217== in use at exit: 618,366 bytes in 8,248 blocks ==24217== total heap usage: 58,547 allocs, 50,299 frees, 1,348,774,552 bytes allocated ==24217== ==24217== LEAK SUMMARY: ==24217== definitely lost: 0 bytes in 0 blocks ==24217== indirectly lost: 0 bytes in 0 blocks ==24217== possibly lost: 0 bytes in 0 blocks ==24217== still reachable: 24 bytes in 2 blocks ==24217== suppressed: 618,342 bytes in 8,246 blocks ==24217== Reachable blocks (those to which a pointer was found) are not shown. ==24217== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==24217== ==24217== For lists of detected and suppressed errors, rerun with: -s ==24217== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 41 from 35)