==26676== Memcheck, a memory error detector ==26676== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==26676== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==26676== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestOffLatticeSimulationWithNodeBasedCellPopulationIn3d -malloc_debug -malloc_dump -memory_info ==26676== Parent PID: 23961 ==26676== ==26676== ==26676== FILE DESCRIPTORS: 9 open (3 std) at exit. ==26676== Open file descriptor 12: ==26676== at 0xF8DE07D: pipe (pipe.c:29) ==26676== by 0x196AB07D: ??? ==26676== by 0x14CB14CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==26676== by 0x1157E418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==26676== by 0x11517D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==26676== by 0x1020ED38: PetscInitialize (pinit.c:924) ==26676== by 0xF0FA1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==26676== by 0xF0FA227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==26676== by 0x13385A: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==26676== by 0x12E813: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==26676== by 0x130FCC: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==26676== by 0x130EC7: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==26676== by 0x1314DB: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==26676== by 0x12D015: main (TestOffLatticeSimulationWithNodeBasedCellPopulationIn3d.cpp:18) ==26676== ==26676== Open file descriptor 8: /dev/shm/open_mpi.0000 ==26676== at 0xF8E2A1C: __open_nocancel (open64_nocancel.c:39) ==26676== by 0xF866BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) ==26676== by 0xF134822: ??? ==26676== by 0xF13496F: ??? ==26676== by 0x14D566DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==26676== by 0x14D56938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==26676== by 0x14D0C922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==26676== by 0x14CB12DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==26676== by 0x1157E418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==26676== by 0x11517D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==26676== by 0x1020ED38: PetscInitialize (pinit.c:924) ==26676== by 0xF0FA1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==26676== by 0xF0FA227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==26676== by 0x13385A: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==26676== by 0x12E813: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==26676== by 0x130FCC: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==26676== by 0x130EC7: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==26676== by 0x1314DB: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==26676== by 0x12D015: main (TestOffLatticeSimulationWithNodeBasedCellPopulationIn3d.cpp:18) ==26676== ==26676== Open file descriptor 113: ==26676== ==26676== ==26676== Open file descriptor 110: ==26676== ==26676== ==26676== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestOffLatticeSimulationWithNodeBasedCellPopulationIn3d_valgrind.txt ==26676== ==26676== ==26676== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==26676== ==26676== ==26676== ==26676== HEAP SUMMARY: ==26676== in use at exit: 618,295 bytes in 8,235 blocks ==26676== total heap usage: 6,672,058 allocs, 6,663,823 frees, 8,995,229,936 bytes allocated ==26676== ==26676== LEAK SUMMARY: ==26676== definitely lost: 0 bytes in 0 blocks ==26676== indirectly lost: 0 bytes in 0 blocks ==26676== possibly lost: 0 bytes in 0 blocks ==26676== still reachable: 56 bytes in 3 blocks ==26676== suppressed: 618,239 bytes in 8,232 blocks ==26676== Reachable blocks (those to which a pointer was found) are not shown. ==26676== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==26676== ==26676== For lists of detected and suppressed errors, rerun with: -s ==26676== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 33 from 33)