==25716== Memcheck, a memory error detector ==25716== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==25716== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==25716== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestAlarcon2004OxygenBasedCellCycleOdeSystem -malloc_debug -malloc_dump -memory_info ==25716== Parent PID: 23947 ==25716== ==25716== ==25716== FILE DESCRIPTORS: 9 open (3 std) at exit. ==25716== Open file descriptor 12: ==25716== at 0xEFDB07D: pipe (pipe.c:29) ==25716== by 0x196F407D: ??? ==25716== by 0x13C984CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==25716== by 0xEC28418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==25716== by 0xEBC1D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==25716== by 0xD8B8D38: PetscInitialize (pinit.c:924) ==25716== by 0xD72A1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==25716== by 0xD72A227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==25716== by 0x123229: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==25716== by 0x11E723: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==25716== by 0x120D04: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==25716== by 0x120C00: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==25716== by 0x121213: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==25716== by 0x11CF25: main (TestAlarcon2004OxygenBasedCellCycleOdeSystem.cpp:18) ==25716== ==25716== Open file descriptor 8: /dev/shm/open_mpi.0000 ==25716== at 0xEFDFA1C: __open_nocancel (open64_nocancel.c:39) ==25716== by 0xEF63BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) ==25716== by 0xD764822: ??? ==25716== by 0xD76496F: ??? ==25716== by 0x13D3D6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==25716== by 0x13D3D938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==25716== by 0x13CF3922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==25716== by 0x13C982DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==25716== by 0xEC28418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==25716== by 0xEBC1D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==25716== by 0xD8B8D38: PetscInitialize (pinit.c:924) ==25716== by 0xD72A1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==25716== by 0xD72A227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==25716== by 0x123229: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==25716== by 0x11E723: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==25716== by 0x120D04: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==25716== by 0x120C00: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==25716== by 0x121213: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==25716== by 0x11CF25: main (TestAlarcon2004OxygenBasedCellCycleOdeSystem.cpp:18) ==25716== ==25716== Open file descriptor 116: ==25716== ==25716== ==25716== Open file descriptor 113: ==25716== ==25716== ==25716== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestAlarcon2004OxygenBasedCellCycleOdeSystem_valgrind.txt ==25716== ==25716== ==25716== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==25716== ==25716== ==25716== ==25716== HEAP SUMMARY: ==25716== in use at exit: 618,322 bytes in 8,238 blocks ==25716== total heap usage: 166,084 allocs, 157,846 frees, 1,349,639,506 bytes allocated ==25716== ==25716== LEAK SUMMARY: ==25716== definitely lost: 0 bytes in 0 blocks ==25716== indirectly lost: 0 bytes in 0 blocks ==25716== possibly lost: 0 bytes in 0 blocks ==25716== still reachable: 24 bytes in 2 blocks ==25716== suppressed: 618,298 bytes in 8,236 blocks ==25716== Reachable blocks (those to which a pointer was found) are not shown. ==25716== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==25716== ==25716== For lists of detected and suppressed errors, rerun with: -s ==25716== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37)