==25287== Memcheck, a memory error detector ==25287== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==25287== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==25287== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestCell -malloc_debug -malloc_dump -memory_info ==25287== Parent PID: 23947 ==25287== ==25287== ==25287== FILE DESCRIPTORS: 9 open (3 std) at exit. ==25287== Open file descriptor 12: ==25287== at 0xED5507D: pipe (pipe.c:29) ==25287== by 0x196F407D: ??? ==25287== by 0x13C474CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==25287== by 0xE9A4418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==25287== by 0xE93DD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==25287== by 0xD611D38: PetscInitialize (pinit.c:924) ==25287== by 0xD4E61D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==25287== by 0xD4E6227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==25287== by 0x1291DB: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==25287== by 0x123ECD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==25287== by 0x126DAA: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==25287== by 0x126C4A: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==25287== by 0x1272E1: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==25287== by 0x1222F5: main (TestCell.cpp:19) ==25287== ==25287== Open file descriptor 8: /dev/shm/open_mpi.0000 ==25287== at 0xED59A1C: __open_nocancel (open64_nocancel.c:39) ==25287== by 0xECDDBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) ==25287== by 0xE8A0822: ??? ==25287== by 0xE8A096F: ??? ==25287== by 0x13CEC6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==25287== by 0x13CEC938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==25287== by 0x13CA2922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==25287== by 0x13C472DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==25287== by 0xE9A4418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==25287== by 0xE93DD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==25287== by 0xD611D38: PetscInitialize (pinit.c:924) ==25287== by 0xD4E61D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==25287== by 0xD4E6227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==25287== by 0x1291DB: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==25287== by 0x123ECD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==25287== by 0x126DAA: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==25287== by 0x126C4A: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==25287== by 0x1272E1: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==25287== by 0x1222F5: main (TestCell.cpp:19) ==25287== ==25287== Open file descriptor 116: ==25287== ==25287== ==25287== Open file descriptor 113: ==25287== ==25287== ==25287== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestCell_valgrind.txt ==25287== ==25287== ==25287== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==25287== ==25287== ==25287== ==25287== HEAP SUMMARY: ==25287== in use at exit: 618,409 bytes in 8,236 blocks ==25287== total heap usage: 5,183,494 allocs, 5,175,258 frees, 1,819,189,392 bytes allocated ==25287== ==25287== LEAK SUMMARY: ==25287== definitely lost: 0 bytes in 0 blocks ==25287== indirectly lost: 0 bytes in 0 blocks ==25287== possibly lost: 0 bytes in 0 blocks ==25287== still reachable: 184 bytes in 4 blocks ==25287== suppressed: 618,225 bytes in 8,232 blocks ==25287== Reachable blocks (those to which a pointer was found) are not shown. ==25287== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==25287== ==25287== For lists of detected and suppressed errors, rerun with: -s ==25287== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 33 from 33)