==39714== Memcheck, a memory error detector ==39714== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==39714== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==39714== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestCreatingAndUsingANewCellPopulationBoundaryConditionTutorial -malloc_debug -malloc_dump -memory_info ==39714== Parent PID: 23947 ==39714== ==39714== ==39714== FILE DESCRIPTORS: 9 open (3 std) at exit. ==39714== Open file descriptor 12: ==39714== at 0x10D3907D: pipe (pipe.c:29) ==39714== by 0x196F407D: ??? ==39714== by 0x14C5A4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==39714== by 0x10641418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==39714== by 0x105DAD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==39714== by 0xF2D1D38: PetscInitialize (pinit.c:924) ==39714== by 0xF1431D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==39714== by 0xF143227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==39714== by 0x144105: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==39714== by 0x13EF9F: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==39714== by 0x141686: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==39714== by 0x141582: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==39714== by 0x141B95: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==39714== by 0x13D795: main (TestCreatingAndUsingANewCellPopulationBoundaryConditionTutorial.cpp:18) ==39714== ==39714== Open file descriptor 8: /dev/shm/open_mpi.0000 ==39714== at 0x10D3DA1C: __open_nocancel (open64_nocancel.c:39) ==39714== by 0x10CC1BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) ==39714== by 0xF17D822: ??? ==39714== by 0xF17D96F: ??? ==39714== by 0x14D016DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==39714== by 0x14D01938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==39714== by 0x14CB7922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==39714== by 0x14C5A2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==39714== by 0x10641418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==39714== by 0x105DAD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==39714== by 0xF2D1D38: PetscInitialize (pinit.c:924) ==39714== by 0xF1431D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==39714== by 0xF143227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==39714== by 0x144105: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==39714== by 0x13EF9F: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==39714== by 0x141686: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==39714== by 0x141582: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==39714== by 0x141B95: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==39714== by 0x13D795: main (TestCreatingAndUsingANewCellPopulationBoundaryConditionTutorial.cpp:18) ==39714== ==39714== Open file descriptor 116: ==39714== ==39714== ==39714== Open file descriptor 113: ==39714== ==39714== ==39714== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestCreatingAndUsingANewCellPopulationBoundaryConditionTutorial_valgrind.txt ==39714== ==39714== ==39714== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==39714== ==39714== ==39714== ==39714== HEAP SUMMARY: ==39714== in use at exit: 618,354 bytes in 8,239 blocks ==39714== total heap usage: 426,417 allocs, 418,178 frees, 1,393,459,942 bytes allocated ==39714== ==39714== LEAK SUMMARY: ==39714== definitely lost: 0 bytes in 0 blocks ==39714== indirectly lost: 0 bytes in 0 blocks ==39714== possibly lost: 0 bytes in 0 blocks ==39714== still reachable: 56 bytes in 3 blocks ==39714== suppressed: 618,298 bytes in 8,236 blocks ==39714== Reachable blocks (those to which a pointer was found) are not shown. ==39714== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==39714== ==39714== For lists of detected and suppressed errors, rerun with: -s ==39714== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37)