==40378== Memcheck, a memory error detector ==40378== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==40378== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==40378== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/crypt/test/TestCryptSimulation2dWithMeshBasedCellPopulation -malloc_debug -malloc_dump -memory_info ==40378== Parent PID: 23947 ==40378== ==40378== ==40378== FILE DESCRIPTORS: 9 open (3 std) at exit. ==40378== Open file descriptor 12: ==40378== at 0x1122B07D: pipe (pipe.c:29) ==40378== by 0x1B3B407D: ??? ==40378== by 0x165BD4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==40378== by 0x12E87418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==40378== by 0x12E20D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==40378== by 0x11B17D38: PetscInitialize (pinit.c:924) ==40378== by 0x10A031D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==40378== by 0x10A03227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==40378== by 0x23B368: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==40378== by 0x231839: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==40378== by 0x235F6A: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==40378== by 0x235E0A: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==40378== by 0x2364A1: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==40378== by 0x22FC55: main (TestCryptSimulation2dWithMeshBasedCellPopulation.cpp:19) ==40378== ==40378== Open file descriptor 8: /dev/shm/open_mpi.0000 ==40378== at 0x1122FA1C: __open_nocancel (open64_nocancel.c:39) ==40378== by 0x111B3BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) ==40378== by 0x10A3D822: ??? ==40378== by 0x10A3D96F: ??? ==40378== by 0x166626DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==40378== by 0x16662938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==40378== by 0x16618922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==40378== by 0x165BD2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==40378== by 0x12E87418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==40378== by 0x12E20D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==40378== by 0x11B17D38: PetscInitialize (pinit.c:924) ==40378== by 0x10A031D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==40378== by 0x10A03227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==40378== by 0x23B368: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==40378== by 0x231839: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==40378== by 0x235F6A: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==40378== by 0x235E0A: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==40378== by 0x2364A1: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==40378== by 0x22FC55: main (TestCryptSimulation2dWithMeshBasedCellPopulation.cpp:19) ==40378== ==40378== Open file descriptor 116: ==40378== ==40378== ==40378== Open file descriptor 113: ==40378== ==40378== ==40378== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestCryptSimulation2dWithMeshBasedCellPopulation_valgrind.txt ==40378== ==40378== ==40378== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==40378== ==40378== ==40378== ==40378== HEAP SUMMARY: ==40378== in use at exit: 618,297 bytes in 8,235 blocks ==40378== total heap usage: 6,308,277 allocs, 6,300,042 frees, 2,056,530,311 bytes allocated ==40378== ==40378== LEAK SUMMARY: ==40378== definitely lost: 0 bytes in 0 blocks ==40378== indirectly lost: 0 bytes in 0 blocks ==40378== possibly lost: 0 bytes in 0 blocks ==40378== still reachable: 56 bytes in 3 blocks ==40378== suppressed: 618,241 bytes in 8,232 blocks ==40378== Reachable blocks (those to which a pointer was found) are not shown. ==40378== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==40378== ==40378== For lists of detected and suppressed errors, rerun with: -s ==40378== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 33 from 33)