==40398== Memcheck, a memory error detector ==40398== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==40398== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==40398== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/crypt/test/TestCryptSimulation2dWithVertexBasedCellPopulation -malloc_debug -malloc_dump -memory_info ==40398== Parent PID: 23947 ==40398== ==40398== ==40398== FILE DESCRIPTORS: 9 open (3 std) at exit. ==40398== Open file descriptor 12: ==40398== at 0x125F907D: pipe (pipe.c:29) ==40398== by 0x1B3B407D: ??? ==40398== by 0x1651F4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==40398== by 0x11F01418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==40398== by 0x11E9AD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==40398== by 0x10B91D38: PetscInitialize (pinit.c:924) ==40398== by 0x10A031D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==40398== by 0x10A03227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==40398== by 0x224461: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==40398== by 0x21BE79: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==40398== by 0x21FA80: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==40398== by 0x21F920: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==40398== by 0x21FFB7: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==40398== by 0x21A295: main (TestCryptSimulation2dWithVertexBasedCellPopulation.cpp:19) ==40398== ==40398== Open file descriptor 8: /dev/shm/open_mpi.0000 ==40398== at 0x125FDA1C: __open_nocancel (open64_nocancel.c:39) ==40398== by 0x12581BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) ==40398== by 0x10A3D822: ??? ==40398== by 0x10A3D96F: ??? ==40398== by 0x165C46DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==40398== by 0x165C4938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==40398== by 0x1657A922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==40398== by 0x1651F2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==40398== by 0x11F01418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==40398== by 0x11E9AD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==40398== by 0x10B91D38: PetscInitialize (pinit.c:924) ==40398== by 0x10A031D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==40398== by 0x10A03227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==40398== by 0x224461: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==40398== by 0x21BE79: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==40398== by 0x21FA80: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==40398== by 0x21F920: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==40398== by 0x21FFB7: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==40398== by 0x21A295: main (TestCryptSimulation2dWithVertexBasedCellPopulation.cpp:19) ==40398== ==40398== Open file descriptor 116: ==40398== ==40398== ==40398== Open file descriptor 113: ==40398== ==40398== ==40398== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestCryptSimulation2dWithVertexBasedCellPopulation_valgrind.txt ==40398== ==40398== ==40398== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==40398== ==40398== ==40398== ==40398== HEAP SUMMARY: ==40398== in use at exit: 618,297 bytes in 8,235 blocks ==40398== total heap usage: 3,713,927 allocs, 3,705,692 frees, 1,620,331,434 bytes allocated ==40398== ==40398== LEAK SUMMARY: ==40398== definitely lost: 0 bytes in 0 blocks ==40398== indirectly lost: 0 bytes in 0 blocks ==40398== possibly lost: 0 bytes in 0 blocks ==40398== still reachable: 56 bytes in 3 blocks ==40398== suppressed: 618,241 bytes in 8,232 blocks ==40398== Reachable blocks (those to which a pointer was found) are not shown. ==40398== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==40398== ==40398== For lists of detected and suppressed errors, rerun with: -s ==40398== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 33 from 33)