==26827== Memcheck, a memory error detector ==26827== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==26827== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==26827== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestOffLatticeSimulationWithPdes -malloc_debug -malloc_dump -memory_info ==26827== Parent PID: 23947 ==26827== ==26827== ==26827== FILE DESCRIPTORS: 9 open (3 std) at exit. ==26827== Open file descriptor 12: ==26827== at 0xFD0807D: pipe (pipe.c:29) ==26827== by 0x196F307D: ??? ==26827== by 0x14CFB4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==26827== by 0x115C7418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==26827== by 0x11560D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==26827== by 0x10257D38: PetscInitialize (pinit.c:924) ==26827== by 0xF4E01D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==26827== by 0xF4E0227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==26827== by 0x22242E: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==26827== by 0x21BAF1: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==26827== by 0x21F62A: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==26827== by 0x21F4CA: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==26827== by 0x21FB61: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==26827== by 0x219ED5: main (TestOffLatticeSimulationWithPdes.cpp:19) ==26827== ==26827== Open file descriptor 8: /dev/shm/open_mpi.0000 ==26827== at 0xFD0CA1C: __open_nocancel (open64_nocancel.c:39) ==26827== by 0xFC90BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) ==26827== by 0xF51A822: ??? ==26827== by 0xF51A96F: ??? ==26827== by 0x14DA06DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==26827== by 0x14DA0938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==26827== by 0x14D56922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==26827== by 0x14CFB2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==26827== by 0x115C7418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==26827== by 0x11560D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==26827== by 0x10257D38: PetscInitialize (pinit.c:924) ==26827== by 0xF4E01D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==26827== by 0xF4E0227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==26827== by 0x22242E: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==26827== by 0x21BAF1: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==26827== by 0x21F62A: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==26827== by 0x21F4CA: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==26827== by 0x21FB61: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==26827== by 0x219ED5: main (TestOffLatticeSimulationWithPdes.cpp:19) ==26827== ==26827== Open file descriptor 116: ==26827== ==26827== ==26827== Open file descriptor 113: ==26827== ==26827== ==26827== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestOffLatticeSimulationWithPdes_valgrind.txt ==26827== ==26827== ==26827== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==26827== ==26827== ==26827== ==26827== HEAP SUMMARY: ==26827== in use at exit: 618,281 bytes in 8,235 blocks ==26827== total heap usage: 7,032,091 allocs, 7,023,856 frees, 2,674,872,984 bytes allocated ==26827== ==26827== LEAK SUMMARY: ==26827== definitely lost: 0 bytes in 0 blocks ==26827== indirectly lost: 0 bytes in 0 blocks ==26827== possibly lost: 0 bytes in 0 blocks ==26827== still reachable: 56 bytes in 3 blocks ==26827== suppressed: 618,225 bytes in 8,232 blocks ==26827== Reachable blocks (those to which a pointer was found) are not shown. ==26827== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==26827== ==26827== For lists of detected and suppressed errors, rerun with: -s ==26827== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 33 from 33)