==39813== Memcheck, a memory error detector ==39813== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==39813== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==39813== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestRunningContactInhibitionSimulationsTutorial -malloc_debug -malloc_dump -memory_info ==39813== Parent PID: 23947 ==39813== ==39813== ==39813== FILE DESCRIPTORS: 9 open (3 std) at exit. ==39813== Open file descriptor 12: ==39813== at 0x10DDE07D: pipe (pipe.c:29) ==39813== by 0x196F407D: ??? ==39813== by 0x14C5A4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==39813== by 0x105FF418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==39813== by 0x10598D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==39813== by 0xF26CD38: PetscInitialize (pinit.c:924) ==39813== by 0xF1431D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==39813== by 0xF143227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==39813== by 0x128209: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==39813== by 0x123673: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==39813== by 0x1259CE: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==39813== by 0x1258CA: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==39813== by 0x125EDD: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==39813== by 0x121E75: main (TestRunningContactInhibitionSimulationsTutorial.cpp:18) ==39813== ==39813== Open file descriptor 8: /dev/shm/open_mpi.0000 ==39813== at 0x10DE2A1C: __open_nocancel (open64_nocancel.c:39) ==39813== by 0x10D66BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) ==39813== by 0x104FB822: ??? ==39813== by 0x104FB96F: ??? ==39813== by 0x14D016DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==39813== by 0x14D01938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==39813== by 0x14CB7922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==39813== by 0x14C5A2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==39813== by 0x105FF418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==39813== by 0x10598D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==39813== by 0xF26CD38: PetscInitialize (pinit.c:924) ==39813== by 0xF1431D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==39813== by 0xF143227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==39813== by 0x128209: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==39813== by 0x123673: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==39813== by 0x1259CE: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==39813== by 0x1258CA: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==39813== by 0x125EDD: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==39813== by 0x121E75: main (TestRunningContactInhibitionSimulationsTutorial.cpp:18) ==39813== ==39813== Open file descriptor 116: ==39813== ==39813== ==39813== Open file descriptor 113: ==39813== ==39813== ==39813== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestRunningContactInhibitionSimulationsTutorial_valgrind.txt ==39813== ==39813== ==39813== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==39813== ==39813== ==39813== ==39813== HEAP SUMMARY: ==39813== in use at exit: 618,281 bytes in 8,235 blocks ==39813== total heap usage: 11,072,697 allocs, 11,064,462 frees, 4,765,709,051 bytes allocated ==39813== ==39813== LEAK SUMMARY: ==39813== definitely lost: 0 bytes in 0 blocks ==39813== indirectly lost: 0 bytes in 0 blocks ==39813== possibly lost: 0 bytes in 0 blocks ==39813== still reachable: 56 bytes in 3 blocks ==39813== suppressed: 618,225 bytes in 8,232 blocks ==39813== Reachable blocks (those to which a pointer was found) are not shown. ==39813== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==39813== ==39813== For lists of detected and suppressed errors, rerun with: -s ==39813== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 33 from 33)