==40230== Memcheck, a memory error detector ==40230== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==40230== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==40230== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/crypt/test/TestVanLeeuwen2009WntSwatCellCycleOdeSystem -malloc_debug -malloc_dump -memory_info ==40230== Parent PID: 23947 ==40230== ==40230== ==40230== FILE DESCRIPTORS: 9 open (3 std) at exit. ==40230== Open file descriptor 12: ==40230== at 0x1283B07D: pipe (pipe.c:29) ==40230== by 0x1B3B407D: ??? ==40230== by 0x1656E4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==40230== by 0x12143418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==40230== by 0x120DCD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==40230== by 0x10DD3D38: PetscInitialize (pinit.c:924) ==40230== by 0x10C451D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==40230== by 0x10C45227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==40230== by 0x136AAD: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==40230== by 0x13133D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==40230== by 0x1340EC: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==40230== by 0x133F8C: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==40230== by 0x134623: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==40230== by 0x12F765: main (TestVanLeeuwen2009WntSwatCellCycleOdeSystem.cpp:19) ==40230== ==40230== Open file descriptor 8: /dev/shm/open_mpi.0000 ==40230== at 0x1283FA1C: __open_nocancel (open64_nocancel.c:39) ==40230== by 0x127C3BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) ==40230== by 0x10C7F822: ??? ==40230== by 0x10C7F96F: ??? ==40230== by 0x166136DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==40230== by 0x16613938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==40230== by 0x165C9922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==40230== by 0x1656E2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==40230== by 0x12143418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==40230== by 0x120DCD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==40230== by 0x10DD3D38: PetscInitialize (pinit.c:924) ==40230== by 0x10C451D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==40230== by 0x10C45227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==40230== by 0x136AAD: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==40230== by 0x13133D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==40230== by 0x1340EC: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==40230== by 0x133F8C: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==40230== by 0x134623: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==40230== by 0x12F765: main (TestVanLeeuwen2009WntSwatCellCycleOdeSystem.cpp:19) ==40230== ==40230== Open file descriptor 116: ==40230== ==40230== ==40230== Open file descriptor 113: ==40230== ==40230== ==40230== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestVanLeeuwen2009WntSwatCellCycleOdeSystem_valgrind.txt ==40230== ==40230== ==40230== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==40230== ==40230== ==40230== ==40230== HEAP SUMMARY: ==40230== in use at exit: 618,338 bytes in 8,238 blocks ==40230== total heap usage: 519,282 allocs, 511,044 frees, 1,547,099,620 bytes allocated ==40230== ==40230== LEAK SUMMARY: ==40230== definitely lost: 0 bytes in 0 blocks ==40230== indirectly lost: 0 bytes in 0 blocks ==40230== possibly lost: 0 bytes in 0 blocks ==40230== still reachable: 24 bytes in 2 blocks ==40230== suppressed: 618,314 bytes in 8,236 blocks ==40230== Reachable blocks (those to which a pointer was found) are not shown. ==40230== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==40230== ==40230== For lists of detected and suppressed errors, rerun with: -s ==40230== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37)