==40257== Memcheck, a memory error detector ==40257== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==40257== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==40257== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/crypt/test/TestWntCellCycleOdeSystem -malloc_debug -malloc_dump -memory_info ==40257== Parent PID: 23947 ==40257== ==40257== ==40257== FILE DESCRIPTORS: 9 open (3 std) at exit. ==40257== Open file descriptor 12: ==40257== at 0x1089B07D: pipe (pipe.c:29) ==40257== by 0x1B3B507D: ??? ==40257== by 0x155584CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==40257== by 0x104E8418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==40257== by 0x10481D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==40257== by 0xF178D38: PetscInitialize (pinit.c:924) ==40257== by 0xEFEA1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==40257== by 0xEFEA227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==40257== by 0x1264BD: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==40257== by 0x1217C3: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==40257== by 0x123E3A: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==40257== by 0x123D36: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==40257== by 0x124349: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==40257== by 0x11FFC5: main (TestWntCellCycleOdeSystem.cpp:18) ==40257== ==40257== Open file descriptor 8: /dev/shm/open_mpi.0000 ==40257== at 0x1089FA1C: __open_nocancel (open64_nocancel.c:39) ==40257== by 0x10823BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) ==40257== by 0xF024822: ??? ==40257== by 0xF02496F: ??? ==40257== by 0x155FD6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==40257== by 0x155FD938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==40257== by 0x155B3922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==40257== by 0x155582DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==40257== by 0x104E8418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==40257== by 0x10481D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==40257== by 0xF178D38: PetscInitialize (pinit.c:924) ==40257== by 0xEFEA1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==40257== by 0xEFEA227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==40257== by 0x1264BD: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==40257== by 0x1217C3: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==40257== by 0x123E3A: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==40257== by 0x123D36: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==40257== by 0x124349: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==40257== by 0x11FFC5: main (TestWntCellCycleOdeSystem.cpp:18) ==40257== ==40257== Open file descriptor 116: ==40257== ==40257== ==40257== Open file descriptor 113: ==40257== ==40257== ==40257== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestWntCellCycleOdeSystem_valgrind.txt ==40257== ==40257== ==40257== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==40257== ==40257== ==40257== ==40257== HEAP SUMMARY: ==40257== in use at exit: 618,338 bytes in 8,238 blocks ==40257== total heap usage: 185,556 allocs, 177,318 frees, 1,419,923,514 bytes allocated ==40257== ==40257== LEAK SUMMARY: ==40257== definitely lost: 0 bytes in 0 blocks ==40257== indirectly lost: 0 bytes in 0 blocks ==40257== possibly lost: 0 bytes in 0 blocks ==40257== still reachable: 24 bytes in 2 blocks ==40257== suppressed: 618,314 bytes in 8,236 blocks ==40257== Reachable blocks (those to which a pointer was found) are not shown. ==40257== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==40257== ==40257== For lists of detected and suppressed errors, rerun with: -s ==40257== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37)