==40477== Memcheck, a memory error detector ==40477== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==40477== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==40477== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/crypt/test/TestCryptSimulation2dWithMeshBasedCellPopulation -malloc_debug -malloc_dump -memory_info ==40477== Parent PID: 23945 ==40477== ==40477== ==40477== FILE DESCRIPTORS: 9 open (3 std) at exit. ==40477== Open file descriptor 12: ==40477== at 0x1122A07D: pipe (pipe.c:29) ==40477== by 0x1B3B407D: ??? ==40477== by 0x165BD4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==40477== by 0x12E86418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==40477== by 0x12E1FD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==40477== by 0x11B16D38: PetscInitialize (pinit.c:924) ==40477== by 0x10A021D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==40477== by 0x10A02227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==40477== by 0x23B368: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==40477== by 0x231839: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==40477== by 0x235F6A: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==40477== by 0x235E0A: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==40477== by 0x2364A1: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==40477== by 0x22FC55: main (TestCryptSimulation2dWithMeshBasedCellPopulation.cpp:19) ==40477== ==40477== Open file descriptor 8: /dev/shm/open_mpi.0000 ==40477== at 0x1122EA1C: __open_nocancel (open64_nocancel.c:39) ==40477== by 0x111B2BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) ==40477== by 0x10A3C822: ??? ==40477== by 0x10A3C96F: ??? ==40477== by 0x166626DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==40477== by 0x16662938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==40477== by 0x16618922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==40477== by 0x165BD2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==40477== by 0x12E86418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==40477== by 0x12E1FD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==40477== by 0x11B16D38: PetscInitialize (pinit.c:924) ==40477== by 0x10A021D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==40477== by 0x10A02227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==40477== by 0x23B368: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==40477== by 0x231839: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==40477== by 0x235F6A: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==40477== by 0x235E0A: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==40477== by 0x2364A1: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==40477== by 0x22FC55: main (TestCryptSimulation2dWithMeshBasedCellPopulation.cpp:19) ==40477== ==40477== Open file descriptor 115: ==40477== ==40477== ==40477== Open file descriptor 112: ==40477== ==40477== ==40477== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestCryptSimulation2dWithMeshBasedCellPopulation_valgrind.txt ==40477== ==40477== ==40477== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==40477== ==40477== ==40477== ==40477== HEAP SUMMARY: ==40477== in use at exit: 618,297 bytes in 8,235 blocks ==40477== total heap usage: 6,308,276 allocs, 6,300,041 frees, 2,056,529,901 bytes allocated ==40477== ==40477== LEAK SUMMARY: ==40477== definitely lost: 0 bytes in 0 blocks ==40477== indirectly lost: 0 bytes in 0 blocks ==40477== possibly lost: 0 bytes in 0 blocks ==40477== still reachable: 56 bytes in 3 blocks ==40477== suppressed: 618,241 bytes in 8,232 blocks ==40477== Reachable blocks (those to which a pointer was found) are not shown. ==40477== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==40477== ==40477== For lists of detected and suppressed errors, rerun with: -s ==40477== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 36 from 36)