==26047== Memcheck, a memory error detector ==26047== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==26047== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==26047== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestNodeBasedCellPopulationWithBuskeUpdate -malloc_debug -malloc_dump -memory_info ==26047== Parent PID: 23945 ==26047== ==26047== ==26047== FILE DESCRIPTORS: 9 open (3 std) at exit. ==26047== Open file descriptor 12: ==26047== at 0xF88107D: pipe (pipe.c:29) ==26047== by 0x196F207D: ??? ==26047== by 0x14CF84CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==26047== by 0x114DF418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==26047== by 0x11478D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==26047== by 0x1016DD38: PetscInitialize (pinit.c:924) ==26047== by 0xF1421D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==26047== by 0xF142227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==26047== by 0x2CC5B8: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==26047== by 0x2C3A9F: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==26047== by 0x2C7EB8: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==26047== by 0x2C7DB3: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==26047== by 0x2C83C7: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==26047== by 0x2C2295: main (TestNodeBasedCellPopulationWithBuskeUpdate.cpp:18) ==26047== ==26047== Open file descriptor 8: /dev/shm/open_mpi.0000 ==26047== at 0xF885A1C: __open_nocancel (open64_nocancel.c:39) ==26047== by 0xF809BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) ==26047== by 0xF17C822: ??? ==26047== by 0xF17C96F: ??? ==26047== by 0x14D9D6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==26047== by 0x14D9D938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==26047== by 0x14D53922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==26047== by 0x14CF82DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==26047== by 0x114DF418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==26047== by 0x11478D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==26047== by 0x1016DD38: PetscInitialize (pinit.c:924) ==26047== by 0xF1421D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==26047== by 0xF142227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==26047== by 0x2CC5B8: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==26047== by 0x2C3A9F: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==26047== by 0x2C7EB8: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==26047== by 0x2C7DB3: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==26047== by 0x2C83C7: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==26047== by 0x2C2295: main (TestNodeBasedCellPopulationWithBuskeUpdate.cpp:18) ==26047== ==26047== Open file descriptor 115: ==26047== ==26047== ==26047== Open file descriptor 112: ==26047== ==26047== ==26047== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestNodeBasedCellPopulationWithBuskeUpdate_valgrind.txt ==26047== ==26047== ==26047== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==26047== ==26047== ==26047== ==26047== HEAP SUMMARY: ==26047== in use at exit: 618,354 bytes in 8,239 blocks ==26047== total heap usage: 56,972 allocs, 48,733 frees, 1,340,208,187 bytes allocated ==26047== ==26047== LEAK SUMMARY: ==26047== definitely lost: 0 bytes in 0 blocks ==26047== indirectly lost: 0 bytes in 0 blocks ==26047== possibly lost: 0 bytes in 0 blocks ==26047== still reachable: 56 bytes in 3 blocks ==26047== suppressed: 618,298 bytes in 8,236 blocks ==26047== Reachable blocks (those to which a pointer was found) are not shown. ==26047== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==26047== ==26047== For lists of detected and suppressed errors, rerun with: -s ==26047== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37)