==26044== Memcheck, a memory error detector ==26044== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==26044== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==26044== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestNodeBasedCellPopulation -malloc_debug -malloc_dump -memory_info ==26044== Parent PID: 23945 ==26044== ==26044== ==26044== FILE DESCRIPTORS: 9 open (3 std) at exit. ==26044== Open file descriptor 12: ==26044== at 0xF91207D: pipe (pipe.c:29) ==26044== by 0x196F207D: ??? ==26044== by 0x14CF84CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==26044== by 0x114DF418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==26044== by 0x11478D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==26044== by 0x1016DD38: PetscInitialize (pinit.c:924) ==26044== by 0xF1D11D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==26044== by 0xF1D1227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==26044== by 0x2E2582: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==26044== by 0x2D9079: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==26044== by 0x2DD8D6: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==26044== by 0x2DD776: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==26044== by 0x2DDE0D: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==26044== by 0x2D7495: main (TestNodeBasedCellPopulation.cpp:19) ==26044== ==26044== Open file descriptor 8: /dev/shm/open_mpi.0000 ==26044== at 0xF916A1C: __open_nocancel (open64_nocancel.c:39) ==26044== by 0xF89ABCF: shm_open@@GLIBC_2.34 (shm_open.c:40) ==26044== by 0xF20B822: ??? ==26044== by 0xF20B96F: ??? ==26044== by 0x14D9D6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==26044== by 0x14D9D938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==26044== by 0x14D53922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==26044== by 0x14CF82DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==26044== by 0x114DF418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==26044== by 0x11478D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==26044== by 0x1016DD38: PetscInitialize (pinit.c:924) ==26044== by 0xF1D11D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==26044== by 0xF1D1227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==26044== by 0x2E2582: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==26044== by 0x2D9079: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==26044== by 0x2DD8D6: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==26044== by 0x2DD776: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==26044== by 0x2DDE0D: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==26044== by 0x2D7495: main (TestNodeBasedCellPopulation.cpp:19) ==26044== ==26044== Open file descriptor 115: ==26044== ==26044== ==26044== Open file descriptor 112: ==26044== ==26044== ==26044== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestNodeBasedCellPopulation_valgrind.txt ==26044== ==26044== ==26044== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==26044== ==26044== ==26044== ==26044== HEAP SUMMARY: ==26044== in use at exit: 618,281 bytes in 8,235 blocks ==26044== total heap usage: 20,192,609 allocs, 20,184,374 frees, 2,562,967,126 bytes allocated ==26044== ==26044== LEAK SUMMARY: ==26044== definitely lost: 0 bytes in 0 blocks ==26044== indirectly lost: 0 bytes in 0 blocks ==26044== possibly lost: 0 bytes in 0 blocks ==26044== still reachable: 56 bytes in 3 blocks ==26044== suppressed: 618,225 bytes in 8,232 blocks ==26044== Reachable blocks (those to which a pointer was found) are not shown. ==26044== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==26044== ==26044== For lists of detected and suppressed errors, rerun with: -s ==26044== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 33 from 33)