==39957== Memcheck, a memory error detector ==39957== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==39957== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==39957== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestRunningDeltaNotchSimulationsTutorial -malloc_debug -malloc_dump -memory_info ==39957== Parent PID: 23945 ==39957== ==39957== ==39957== FILE DESCRIPTORS: 9 open (3 std) at exit. ==39957== Open file descriptor 12: ==39957== at 0xF83F07D: pipe (pipe.c:29) ==39957== by 0x196F207D: ??? ==39957== by 0x14CF84CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==39957== by 0x114DF418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==39957== by 0x11478D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==39957== by 0x1016DD38: PetscInitialize (pinit.c:924) ==39957== by 0xF1421D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==39957== by 0xF142227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==39957== by 0x122D30: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==39957== by 0x11E513: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==39957== by 0x120830: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==39957== by 0x12072B: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==39957== by 0x120D3F: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==39957== by 0x11CD15: main (TestRunningDeltaNotchSimulationsTutorial.cpp:18) ==39957== ==39957== Open file descriptor 8: /dev/shm/open_mpi.0000 ==39957== at 0xF843A1C: __open_nocancel (open64_nocancel.c:39) ==39957== by 0xF7C7BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) ==39957== by 0xF17C822: ??? ==39957== by 0xF17C96F: ??? ==39957== by 0x14D9D6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==39957== by 0x14D9D938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==39957== by 0x14D53922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==39957== by 0x14CF82DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==39957== by 0x114DF418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==39957== by 0x11478D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==39957== by 0x1016DD38: PetscInitialize (pinit.c:924) ==39957== by 0xF1421D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==39957== by 0xF142227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==39957== by 0x122D30: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==39957== by 0x11E513: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==39957== by 0x120830: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==39957== by 0x12072B: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==39957== by 0x120D3F: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==39957== by 0x11CD15: main (TestRunningDeltaNotchSimulationsTutorial.cpp:18) ==39957== ==39957== Open file descriptor 115: ==39957== ==39957== ==39957== Open file descriptor 112: ==39957== ==39957== ==39957== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestRunningDeltaNotchSimulationsTutorial_valgrind.txt ==39957== ==39957== ==39957== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==39957== ==39957== ==39957== ==39957== HEAP SUMMARY: ==39957== in use at exit: 618,281 bytes in 8,235 blocks ==39957== total heap usage: 5,177,186 allocs, 5,168,951 frees, 1,778,169,724 bytes allocated ==39957== ==39957== LEAK SUMMARY: ==39957== definitely lost: 0 bytes in 0 blocks ==39957== indirectly lost: 0 bytes in 0 blocks ==39957== possibly lost: 0 bytes in 0 blocks ==39957== still reachable: 56 bytes in 3 blocks ==39957== suppressed: 618,225 bytes in 8,232 blocks ==39957== Reachable blocks (those to which a pointer was found) are not shown. ==39957== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==39957== ==39957== For lists of detected and suppressed errors, rerun with: -s ==39957== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 33 from 33)