==40043== Memcheck, a memory error detector ==40043== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==40043== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==40043== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestRunningMeshBasedSimulationsTutorial -malloc_debug -malloc_dump -memory_info ==40043== Parent PID: 23945 ==40043== ==40043== ==40043== FILE DESCRIPTORS: 9 open (3 std) at exit. ==40043== Open file descriptor 12: ==40043== at 0x10CF607D: pipe (pipe.c:29) ==40043== by 0x196F207D: ??? ==40043== by 0x14C5A4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==40043== by 0x105FE418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==40043== by 0x10597D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==40043== by 0xF26BD38: PetscInitialize (pinit.c:924) ==40043== by 0xF1421D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==40043== by 0xF142227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==40043== by 0x1222CD: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==40043== by 0x11D84D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==40043== by 0x11FE3C: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==40043== by 0x11FCDC: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==40043== by 0x120373: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==40043== by 0x11BC75: main (TestRunningMeshBasedSimulationsTutorial.cpp:19) ==40043== ==40043== Open file descriptor 8: /dev/shm/open_mpi.0000 ==40043== at 0x10CFAA1C: __open_nocancel (open64_nocancel.c:39) ==40043== by 0x10C7EBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) ==40043== by 0x104FA822: ??? ==40043== by 0x104FA96F: ??? ==40043== by 0x14CFF6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==40043== by 0x14CFF938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==40043== by 0x14CB5922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==40043== by 0x14C5A2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==40043== by 0x105FE418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==40043== by 0x10597D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==40043== by 0xF26BD38: PetscInitialize (pinit.c:924) ==40043== by 0xF1421D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==40043== by 0xF142227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==40043== by 0x1222CD: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==40043== by 0x11D84D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==40043== by 0x11FE3C: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==40043== by 0x11FCDC: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==40043== by 0x120373: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==40043== by 0x11BC75: main (TestRunningMeshBasedSimulationsTutorial.cpp:19) ==40043== ==40043== Open file descriptor 115: ==40043== ==40043== ==40043== Open file descriptor 112: ==40043== ==40043== ==40043== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestRunningMeshBasedSimulationsTutorial_valgrind.txt ==40043== ==40043== ==40043== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==40043== ==40043== ==40043== ==40043== HEAP SUMMARY: ==40043== in use at exit: 618,281 bytes in 8,235 blocks ==40043== total heap usage: 3,334,891 allocs, 3,326,656 frees, 2,266,434,794 bytes allocated ==40043== ==40043== LEAK SUMMARY: ==40043== definitely lost: 0 bytes in 0 blocks ==40043== indirectly lost: 0 bytes in 0 blocks ==40043== possibly lost: 0 bytes in 0 blocks ==40043== still reachable: 56 bytes in 3 blocks ==40043== suppressed: 618,225 bytes in 8,232 blocks ==40043== Reachable blocks (those to which a pointer was found) are not shown. ==40043== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==40043== ==40043== For lists of detected and suppressed errors, rerun with: -s ==40043== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 33 from 33)