==40445== Memcheck, a memory error detector ==40445== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==40445== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==40445== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/crypt/test/TestVertexBasedCellPopulationForCrypt -malloc_debug -malloc_dump -memory_info ==40445== Parent PID: 24071 ==40445== ==40445== ==40445== FILE DESCRIPTORS: 9 open (3 std) at exit. ==40445== Open file descriptor 12: ==40445== at 0x1257007D: pipe (pipe.c:29) ==40445== by 0x1B36D07D: ??? ==40445== by 0x164D24CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==40445== by 0x11E78418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==40445== by 0x11E11D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==40445== by 0x10AE5D38: PetscInitialize (pinit.c:924) ==40445== by 0x109BC1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==40445== by 0x109BC227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==40445== by 0x11D953: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==40445== by 0x119133: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==40445== by 0x11B52C: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==40445== by 0x11B427: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==40445== by 0x11BA3B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==40445== by 0x117935: main (TestVertexBasedCellPopulationForCrypt.cpp:18) ==40445== ==40445== Open file descriptor 8: /dev/shm/open_mpi.0000 ==40445== at 0x12574A1C: __open_nocancel (open64_nocancel.c:39) ==40445== by 0x124F8BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) ==40445== by 0x11D74822: ??? ==40445== by 0x11D7496F: ??? ==40445== by 0x165796DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==40445== by 0x16579938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==40445== by 0x1652F922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==40445== by 0x164D22DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==40445== by 0x11E78418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==40445== by 0x11E11D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==40445== by 0x10AE5D38: PetscInitialize (pinit.c:924) ==40445== by 0x109BC1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==40445== by 0x109BC227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==40445== by 0x11D953: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==40445== by 0x119133: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==40445== by 0x11B52C: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==40445== by 0x11B427: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==40445== by 0x11BA3B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==40445== by 0x117935: main (TestVertexBasedCellPopulationForCrypt.cpp:18) ==40445== ==40445== Open file descriptor 113: ==40445== ==40445== ==40445== Open file descriptor 110: ==40445== ==40445== ==40445== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestVertexBasedCellPopulationForCrypt_valgrind.txt ==40445== ==40445== ==40445== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==40445== ==40445== ==40445== ==40445== HEAP SUMMARY: ==40445== in use at exit: 618,450 bytes in 8,240 blocks ==40445== total heap usage: 53,903 allocs, 45,663 frees, 1,338,962,740 bytes allocated ==40445== ==40445== LEAK SUMMARY: ==40445== definitely lost: 0 bytes in 0 blocks ==40445== indirectly lost: 0 bytes in 0 blocks ==40445== possibly lost: 0 bytes in 0 blocks ==40445== still reachable: 136 bytes in 4 blocks ==40445== suppressed: 618,314 bytes in 8,236 blocks ==40445== Reachable blocks (those to which a pointer was found) are not shown. ==40445== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==40445== ==40445== For lists of detected and suppressed errors, rerun with: -s ==40445== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37)