==40020== Memcheck, a memory error detector ==40020== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==40020== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==40020== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestRunningImmersedBoundarySimulationsTutorial -malloc_debug -malloc_dump -memory_info ==40020== Parent PID: 24021 ==40020== ==40020== ==40020== FILE DESCRIPTORS: 9 open (3 std) at exit. ==40020== Open file descriptor 12: ==40020== at 0x10CB007D: pipe (pipe.c:29) ==40020== by 0x196AD07D: ??? ==40020== by 0x14C134CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==40020== by 0x105B8418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==40020== by 0x10551D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==40020== by 0xF225D38: PetscInitialize (pinit.c:924) ==40020== by 0xF0FC1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==40020== by 0xF0FC227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==40020== by 0x120CF3: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==40020== by 0x11C533: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==40020== by 0x11E8AC: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==40020== by 0x11E7A7: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==40020== by 0x11EDBB: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==40020== by 0x11AD35: main (TestRunningImmersedBoundarySimulationsTutorial.cpp:18) ==40020== ==40020== Open file descriptor 8: /dev/shm/open_mpi.0000 ==40020== at 0x10CB4A1C: __open_nocancel (open64_nocancel.c:39) ==40020== by 0x10C38BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) ==40020== by 0x104B5822: ??? ==40020== by 0x104B596F: ??? ==40020== by 0x14CB86DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==40020== by 0x14CB8938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==40020== by 0x14C6E922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==40020== by 0x14C132DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==40020== by 0x105B8418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==40020== by 0x10551D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==40020== by 0xF225D38: PetscInitialize (pinit.c:924) ==40020== by 0xF0FC1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==40020== by 0xF0FC227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==40020== by 0x120CF3: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==40020== by 0x11C533: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==40020== by 0x11E8AC: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==40020== by 0x11E7A7: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==40020== by 0x11EDBB: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==40020== by 0x11AD35: main (TestRunningImmersedBoundarySimulationsTutorial.cpp:18) ==40020== ==40020== Open file descriptor 113: ==40020== ==40020== ==40020== Open file descriptor 110: ==40020== ==40020== ==40020== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestRunningImmersedBoundarySimulationsTutorial_valgrind.txt ==40020== ==40020== ==40020== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==40020== ==40020== ==40020== ==40020== HEAP SUMMARY: ==40020== in use at exit: 618,279 bytes in 8,235 blocks ==40020== total heap usage: 654,977 allocs, 646,742 frees, 1,512,860,571 bytes allocated ==40020== ==40020== LEAK SUMMARY: ==40020== definitely lost: 0 bytes in 0 blocks ==40020== indirectly lost: 0 bytes in 0 blocks ==40020== possibly lost: 0 bytes in 0 blocks ==40020== still reachable: 56 bytes in 3 blocks ==40020== suppressed: 618,223 bytes in 8,232 blocks ==40020== Reachable blocks (those to which a pointer was found) are not shown. ==40020== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==40020== ==40020== For lists of detected and suppressed errors, rerun with: -s ==40020== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 31 from 31)