==40694== Memcheck, a memory error detector ==40694== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==40694== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==40694== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/crypt/test/TestCryptSimulation2dWithVertexBasedCellPopulation -malloc_debug -malloc_dump -memory_info ==40694== Parent PID: 24036 ==40694== ==40694== ==40694== FILE DESCRIPTORS: 9 open (3 std) at exit. ==40694== Open file descriptor 12: ==40694== at 0x125B207D: pipe (pipe.c:29) ==40694== by 0x1B36D07D: ??? ==40694== by 0x164D24CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==40694== by 0x11EBA418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==40694== by 0x11E53D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==40694== by 0x10B4AD38: PetscInitialize (pinit.c:924) ==40694== by 0x109BC1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==40694== by 0x109BC227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==40694== by 0x224461: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==40694== by 0x21BE79: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==40694== by 0x21FA80: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==40694== by 0x21F920: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==40694== by 0x21FFB7: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==40694== by 0x21A295: main (TestCryptSimulation2dWithVertexBasedCellPopulation.cpp:19) ==40694== ==40694== Open file descriptor 8: /dev/shm/open_mpi.0000 ==40694== at 0x125B6A1C: __open_nocancel (open64_nocancel.c:39) ==40694== by 0x1253ABCF: shm_open@@GLIBC_2.34 (shm_open.c:40) ==40694== by 0x109F7822: ??? ==40694== by 0x109F796F: ??? ==40694== by 0x165796DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==40694== by 0x16579938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==40694== by 0x1652F922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==40694== by 0x164D22DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==40694== by 0x11EBA418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==40694== by 0x11E53D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==40694== by 0x10B4AD38: PetscInitialize (pinit.c:924) ==40694== by 0x109BC1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==40694== by 0x109BC227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==40694== by 0x224461: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==40694== by 0x21BE79: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==40694== by 0x21FA80: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==40694== by 0x21F920: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==40694== by 0x21FFB7: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==40694== by 0x21A295: main (TestCryptSimulation2dWithVertexBasedCellPopulation.cpp:19) ==40694== ==40694== Open file descriptor 113: ==40694== ==40694== ==40694== Open file descriptor 110: ==40694== ==40694== ==40694== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestCryptSimulation2dWithVertexBasedCellPopulation_valgrind.txt ==40694== ==40694== ==40694== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==40694== ==40694== ==40694== ==40694== HEAP SUMMARY: ==40694== in use at exit: 618,295 bytes in 8,235 blocks ==40694== total heap usage: 3,713,954 allocs, 3,705,719 frees, 1,620,332,662 bytes allocated ==40694== ==40694== LEAK SUMMARY: ==40694== definitely lost: 0 bytes in 0 blocks ==40694== indirectly lost: 0 bytes in 0 blocks ==40694== possibly lost: 0 bytes in 0 blocks ==40694== still reachable: 56 bytes in 3 blocks ==40694== suppressed: 618,239 bytes in 8,232 blocks ==40694== Reachable blocks (those to which a pointer was found) are not shown. ==40694== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==40694== ==40694== For lists of detected and suppressed errors, rerun with: -s ==40694== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 33 from 33)