==39675== Memcheck, a memory error detector ==39675== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==39675== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==39675== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestCreatingAndUsingANewCellBasedSimulationModifierTutorial -malloc_debug -malloc_dump -memory_info ==39675== Parent PID: 23997 ==39675== ==39675== ==39675== FILE DESCRIPTORS: 9 open (3 std) at exit. ==39675== Open file descriptor 12: ==39675== at 0x10CF207D: pipe (pipe.c:29) ==39675== by 0x196AD07D: ??? ==39675== by 0x14C134CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==39675== by 0x105FA418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==39675== by 0x10593D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==39675== by 0xF28AD38: PetscInitialize (pinit.c:924) ==39675== by 0xF0FC1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==39675== by 0xF0FC227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==39675== by 0x13161D: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==39675== by 0x12C98F: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==39675== by 0x12EEE0: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==39675== by 0x12EDDB: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==39675== by 0x12F3EF: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==39675== by 0x12B185: main (TestCreatingAndUsingANewCellBasedSimulationModifierTutorial.cpp:18) ==39675== ==39675== Open file descriptor 8: /dev/shm/open_mpi.0000 ==39675== at 0x10CF6A1C: __open_nocancel (open64_nocancel.c:39) ==39675== by 0x10C7ABCF: shm_open@@GLIBC_2.34 (shm_open.c:40) ==39675== by 0xF137822: ??? ==39675== by 0xF13796F: ??? ==39675== by 0x14CB86DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==39675== by 0x14CB8938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==39675== by 0x14C6E922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==39675== by 0x14C132DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==39675== by 0x105FA418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==39675== by 0x10593D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==39675== by 0xF28AD38: PetscInitialize (pinit.c:924) ==39675== by 0xF0FC1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==39675== by 0xF0FC227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==39675== by 0x13161D: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==39675== by 0x12C98F: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==39675== by 0x12EEE0: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==39675== by 0x12EDDB: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==39675== by 0x12F3EF: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==39675== by 0x12B185: main (TestCreatingAndUsingANewCellBasedSimulationModifierTutorial.cpp:18) ==39675== ==39675== Open file descriptor 113: ==39675== ==39675== ==39675== Open file descriptor 110: ==39675== ==39675== ==39675== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestCreatingAndUsingANewCellBasedSimulationModifierTutorial_valgrind.txt ==39675== ==39675== ==39675== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==39675== ==39675== ==39675== ==39675== HEAP SUMMARY: ==39675== in use at exit: 618,354 bytes in 8,239 blocks ==39675== total heap usage: 514,148 allocs, 505,909 frees, 1,651,566,749 bytes allocated ==39675== ==39675== LEAK SUMMARY: ==39675== definitely lost: 0 bytes in 0 blocks ==39675== indirectly lost: 0 bytes in 0 blocks ==39675== possibly lost: 0 bytes in 0 blocks ==39675== still reachable: 56 bytes in 3 blocks ==39675== suppressed: 618,298 bytes in 8,236 blocks ==39675== Reachable blocks (those to which a pointer was found) are not shown. ==39675== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==39675== ==39675== For lists of detected and suppressed errors, rerun with: -s ==39675== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 35 from 35)